Table 3.
Multiple Linear Regression Analyses Predicting LOH Frequency from Telomere Length or Attrition by Chromosome Arm and Cell Type
| % of LOH by Chromosome arm |
TL in Cancer cells | TL in CAFs | TL in Lymphocytes | Telomere attrition in cancer cells |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Slope | SE | P | Slope | SE | P | Slope | SE | P | Slope | SE | P | |
| 1p | −2.9 | 6.6 | 0.668 | 11.9 | 6.8 | 0.089 | 5.5 | 5.5 | 0.328 | 11.0 | 5.7 | 0.069 |
| 1q | −1.0 | 5.8 | 0.864 | 1.1 | 6.2 | 0.864 | 3.4 | 4.8 | 0.487 | 1.6 | 5.2 | 0.767 |
| 3q | 3.3 | 5.4 | 0.546 | 4.4 | 5.8 | 0.453 | 5.5 | 4.5 | 0.230 | 4.3 | 4.9 | 0.931 |
| 4p | 15.7 | 9.6 | 0.112 | 26.0 | 9.7 | 0.011 | 13.2 | 8.1 | 0.112 | 5.6 | 8.9 | 0.531 |
| 4q | 14.2 | 9.4 | 0.138 | 31.8 | 8.8 | 0.001 | 20.9 | 7.3 | 0.007 | 10.8 | 8.5 | 0.209 |
| 5p | −1.3 | 5.2 | 0.807 | 11.5 | 5.2 | 0.036 | 3.6 | 4.3 | 0.412 | 9.0 | 4.4 | 0.048 |
| 5q | −2.9 | 8.7 | 0.738 | 23.1 | 8.4 | 0.010 | 11.8 | 7.0 | 0.101 | 18.5 | 7.1 | 0.014 |
| 6q | −4.1 | 7.0 | 0.556 | 15.4 | 7.0 | 0.035 | 7.6 | 5.7 | 0.195 | 14.1 | 5.8 | 0.020 |
| 10q | 5.0 | 7.8 | 0.531 | 18.2 | 7.8 | 0.027 | 16.8 | 6.0 | 0.008 | 8.7 | 6.9 | 0.214 |
| 12p | 10.6 | 5.6 | 0.066 | 14.3 | 5.8 | 0.019 | −1.1 | 5.0 | 0.831 | 1.6 | 5.3 | 0.757 |
| 12q | 11.4 | 4.4 | 0.014 | 19.2 | 4.0 | <0.001 | 9.8 | 3.7 | 0.012 | 4.3 | 4.2 | 0.316 |
| 13q | 7.7 | 9.6 | 0.429 | 27.1 | 9.3 | 0.006 | 10.2 | 7.9 | 0.208 | 12.8 | 8.4 | 0.134 |
| 15q | 3.7 | 8.6 | 0.674 | 28.4 | 7.9 | 0.001 | 16.8 | 6.7 | 0.016 | 16.9 | 7.2 | 0.024 |
| 16p | −4.9 | 5.4 | 0.370 | 14.4 | 5.4 | 0.011 | 10.0 | 4.3 | 0.026 | 14.0 | 4.3 | 0.003 |
| 16q | −2.2 | 6.1 | 0.723 | 15.9 | 6.0 | 0.011 | 8.9 | 4.9 | 0.080 | 13.0 | 5.0 | 0.015 |
LOH = loss of heterozygosity; TL = telomere length; CAFs = carcinoma-associated fibroblasts
Adjusted for age, gender, smoking status, tumor grade, family history of UGI cancer
All the values for slope and standard error (SE) are × 10−4.