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. 2013 Apr 1;10(4):579–589. doi: 10.4161/rna.24341

graphic file with name rna-10-579-g4.jpg

Figure 4. Perturbations of TIAR2L chemical shifts upon RNA binding. (A) An overlay of the assigned (15N,1H)-HSQC spectra of TIAR2L alone and in complex with different concentrations of 6-nt AU-rich RNA (5′-UUAUUU-3′). The molar ratio of TIAR2L to RNA is 1:0 (black), 1:0.4 (red), 1:0.8 (pink) and 1:1.2 (blue). (B) Chemical shift perturbation values for each residue were calculated at the TIAR2L to RNA 1:1.2 ratio as Δδ = {[0.154 (δ15N)2+ 0.25 (δ13Cα)2+ 0.25 (δ13Cβ)2+ (δ1H)2]/4}1/2 and plotted against the amino acid sequence of TIAR2L. The 20 residues showing the largest perturbations upon RNA-binding are colored (red > 0.20 ppm; orange > 0.14 ppm; yellow > 0.08 ppm). (C) Cartoon representation of the TIAR RRM2 structure (PDB ID: 2DH7) with residues affected by RNA-binding colored as in (B) with residues that showed lesser chemical shift perturbations upon RNA binding colored gray.