Table 1. The 3′ends of polyadenylated RNAs.
| Polyadenylated mRNAs |
|---|
| rpsO—UAAUUUCUUGCGAGUUUCAGAAAAGGGGCCUGAGUGGCCCCUUUUUUC |
| cspA—UAAUCUCUGCUUAAAAGCACAGAAUCUAAGAUCCCUGCCAUUUGGCGGGGAUUUUUUU |
| lpp—UAAUAGUACCUGUGAAGUGAAAAAUGGCGCACAUUGUGCGCCAUUUUUUUU |
| ompA—UAAGUUCUCGUCUGGUAGAAAAACCCCGCUGCUGCGGGGUUUUUUUU |
| rpsT—UCAACAAACUGGCUUAAUCGCCAAUUUGCUGAAGCUUUGUGAAAAAGCCCGCG |
| CAAGCGGGUUUUUUU |
| Polyadenylated sRNAs |
|---|
| RNA 1 pAUUUGGUAUCUGCGCUCUGCUGAAGCCAGUUACCUUCGGAAAAAGAGUUGGUAG |
| CUCUUGAUCCGGCAAACAAACCACCGCUGGUAGCGGUGGUUUUUUUGUU |
| CopA pUUUAAGUGGGCCCCGGUAAUCUUUUCGUACUCGCCAAAGUUGAAGAAGAUUAUC |
| GGGGUUUUUGCUU |
| Oop pppGUUGAUAGAUCCAGUAAUGACCUCAGAACUCCAUCUGGAUUUGUUC |
| AGAACGCUCGGUUGCCGCCGGGCGUUUUUUA |
| Sok pppGACUAGACAUAGGGAUGCCUCGUGGUGGUUAAUGAAAAUUAACUUACUACGG |
| GGCUAUUUCCUU |
| RNA OUT |
|---|
| pppUCGCACAUCUUGUUGUCUGAUUAUUGAUUUUUCGCGAAACCAUUUGAUCAUA |
| UGACAAGAUGUGUAUCC |
| SraL—GAUAGAGAGAAAGACAAAGACCGGAAAACAAACUAAAGCGCCCUUGUGGCGCUUUAGUUU |
| SraG— AUUAGUUUCCAGUGAUUGCUGCCGUCAGCUUGAAAAAAGGGGCCACUCAGGCCCCCUUUUCU |
| CsrC— CCCGUUAAGGGUUAAGAGUCAGGAAAAAAGGCGACAGAGUAAUCUGUCGCCUUUUUUCUU |
| GlmY—GCUUAUUCCAUAACAAAGCCGGGUAAUUCCCGGCUUUGUU |
| Hfq complexes |
|---|
| SgrS—GUAUUGGUGUAAAAUCACCCGCCAGCAGAUUAUACCUGCUGGUUUUUUUU |
| flgL—UAACGCCUCUUUUUGAAACAUAUCACGAAACUGGAUAUGUUUUGUCUGCCCGCGCC |
| AUCCACCCCGGCGCGGGCAUUUUUUUA |
Sequence data are from references quoted in the text and from databases. SgrS and flgL are taken as examples of an sRNA and mRNA-forming stable complexes with Hfq.85 The 3′ terminal oligo (U) sequences and the complementary stretches of As are underlined. Secondary structures are shaded un gray (light gray for the terminator and dark gray for the upstream hairpin). Termination codons of mRNAs are in bold, ppp and p at the 5′ ends means that the full-length or a processed sRNA are shown, respectively.