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. Author manuscript; available in PMC: 2013 Jul 16.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):91–99. doi: 10.1109/TCBB.2008.29

TABLE 2.

A Comparison between the Annotations Predicted from 2003 GO Data and the Actual 2006 GO Data

atn atm atc mtn ntn ntm ntc Its
confirmed relations 53 39 331 16 149 255 339 25
relations above threshold 1552 1035 29552 1576 6040 14418 29033 2790
threshold used 0.17 0.34 0.04 0.04 0.02 0.12 0.04 0.04

The columns contain the number of confirmed predictions in the May 2006 GO database, the total number of predictions above the threshold, and the threshold used for each of the weighting schemes. atm, atn, ntn, and ntm performed best, but the results were not conclusive.