Table 1.
Dissociation constants of type I homoarginine-equivalent arginine mimetic peptides (hAMI).
Kd, μM |
Error | ΔG, kcal mol−1 |
ΔΔGaffinity, a kcal mol−1 |
ΔΔGspecificity, b kcal mol−1 |
||
---|---|---|---|---|---|---|
|
||||||
Src | Arg | 5.3 | 0.3 | −7.2 | 0 | −1.0 |
Dap-Ac | 91 | 5.3 | −5.5 | 1.68 | −0.7 | |
hArg(gGly) | 11.1 | 0.2 | −6.7 | 0.44 | −0.9 | |
hArg(gl-Val) | 25.5 | 1.3 | −6.2 | 0.93 | −1.0 | |
hArg(gd-Val) | 22.5 | 1.1 | −6.3 | 0.86 | −1.9 | |
hArg(gl-Phe) | 23.9 | 1.1 | −6.3 | 0.89 | −0.7 | |
hArg(gd-Phe) | 15.9 | 0.6 | −6.5 | 0.65 | −2.0 | |
hArg(gl-Trp) | 31.8 | 1.5 | −6.1 | 1.07 | −0.5 | |
hArg(gd-Trp) | 12.6 | 1.1 | −6.7 | 0.52 | −1.5 | |
Grb | Arg | 29 | 2 | −6.2 | 0 | |
Dap-Ac | 320 | 104 | −4.8 | 1.42 | ||
hArg(gGly) | 50 | 6 | −5.8 | 0.32 | ||
hArg(gl-Val) | 141 | 12 | −5.2 | 0.93 | ||
hArg(gd-Val) | 576 | 19 | −4.4 | 1.76 | ||
hArg(gl-Phe) | 82 | 7 | −5.6 | 0.61 | ||
hArg(gd-Phe) | 451 | 22 | −4.6 | 1.62 | ||
hArg(gl-Trp) | 72 | 3 | −5.6 | 0.54 | ||
hArg(gd-Trp) | 164 | 7 | −5.1 | 1.02 |
ΔΔGaffinity = ΔG (peptide) – ΔG (Arg).
ΔΔGspecificity = ΔGSrc – ΔGGrb for a given peptide. All peptides bound poorly to Crk (Kd > 250 μM). All experiments were conducted in PBS at 25 °C.