A. Genome organization of RtPV2. The line indicates the complete genome with size indication. The boxes represent open reading frames encoding early (E) and late (L) proteins). B–C. Phylogenetic trees of the L1 ORF (B) and complete genome (C) nucleotide sequences of selected representative papillomaviruses were generated using MEGA5, with the Maximum Likelihood method with Kimura-2 parameter model and 1,000 bootstrap replicates. Significant bootstrap values are shown. The different papillomavirus genera are indicated. Human papillomavirus (HPV1, HPV4, HPV5, HPV32, HPV41), V01116, NC_001457, M17463, NC_001586, NC_001354;.
Canis familiaris papillomavirus (CPV2, CPV3, CPV6), NC_006564, NC_008297, NC_013237; European elk papillomavirus (AaPV1), NC_001524; Sus scrofa papillomavirus (SsPV1), NC_011280;
Francolinus
leucoscepus
papillomavirus 1 (FlPV1), NC_013117 ;
Erinaceus
europaeus
papillomavirus 1 (EePV1), NC_011765; Equus caballus papillomavirus 1 (EcPV1), NC_003748; Equus caballus papillomavirus 2 (EcPV2), NC_012123;
Felis
domesticus
papillomavirus 2 (FcaPV2), EU796884;
Caretta
caretta
papillomavirus 1 (CcPV1), NC_011530; Bovine papillomavirus (BPV3, 4, 5, 6, 9, 10, 11, 12), NC_004197, .
X05817, NC_004195, AJ620208, AB331650, AB331651, AB543507, JF834523;
Fringilla
coelebs
papillomavirus (FcPV1), NC_004068; Mastomys natalensis papillomavirus (MnPV1), NC_001605; Cottontail rabbit papillomavirus (SfPV1), NC_001541;
Ursus
maritimus
papillomavirus 1 (UmPV1), NC_010739;
Capra
hircus
papillomavirus 1 (ChPV1), NC_008032;
Phocoena
spinipinnis
papillomavirus (PsPV1), NC_003348; Hamster oral papillomavirus (MaPV1), E15111;
Rousettus
aegyptiacus
papillomavirus 1 (RaPV1), NC_008298;
Trichechus
manatus
papillomavirus 1 (TmPV1), NC_006563;
Erethizon
dorsatum
papillomavirus 1 (EdPV1), NC_006951;
Psittacus
erithacus
timneh papillomavirus (PePV1), NC_003973;
Tursiops
truncatus
papillomavirus 1 (TtPV1), NC_011109;
Odocoileus
virginianus
papillomavirus 1 (OvPV1), NC_001523;
Rangifer
tarandus
papillomavirus (RtPV1, RtPV2), AF443292, KC810012.