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. 2013 Jul 16;8(7):e69711. doi: 10.1371/journal.pone.0069711

Figure 2. Genome organization and phylogenetic analysis of RtPV2.

Figure 2

A. Genome organization of RtPV2. The line indicates the complete genome with size indication. The boxes represent open reading frames encoding early (E) and late (L) proteins). B–C. Phylogenetic trees of the L1 ORF (B) and complete genome (C) nucleotide sequences of selected representative papillomaviruses were generated using MEGA5, with the Maximum Likelihood method with Kimura-2 parameter model and 1,000 bootstrap replicates. Significant bootstrap values are shown. The different papillomavirus genera are indicated. Human papillomavirus (HPV1, HPV4, HPV5, HPV32, HPV41), V01116, NC_001457, M17463, NC_001586, NC_001354;.

Canis familiaris papillomavirus (CPV2, CPV3, CPV6), NC_006564, NC_008297, NC_013237; European elk papillomavirus (AaPV1), NC_001524; Sus scrofa papillomavirus (SsPV1), NC_011280; Francolinus leucoscepus papillomavirus 1 (FlPV1), NC_013117 ; Erinaceus europaeus papillomavirus 1 (EePV1), NC_011765; Equus caballus papillomavirus 1 (EcPV1), NC_003748; Equus caballus papillomavirus 2 (EcPV2), NC_012123; Felis domesticus papillomavirus 2 (FcaPV2), EU796884; Caretta caretta papillomavirus 1 (CcPV1), NC_011530; Bovine papillomavirus (BPV3, 4, 5, 6, 9, 10, 11, 12), NC_004197, .

X05817, NC_004195, AJ620208, AB331650, AB331651, AB543507, JF834523; Fringilla coelebs papillomavirus (FcPV1), NC_004068; Mastomys natalensis papillomavirus (MnPV1), NC_001605; Cottontail rabbit papillomavirus (SfPV1), NC_001541; Ursus maritimus papillomavirus 1 (UmPV1), NC_010739; Capra hircus papillomavirus 1 (ChPV1), NC_008032; Phocoena spinipinnis papillomavirus (PsPV1), NC_003348; Hamster oral papillomavirus (MaPV1), E15111; Rousettus aegyptiacus papillomavirus 1 (RaPV1), NC_008298; Trichechus manatus papillomavirus 1 (TmPV1), NC_006563; Erethizon dorsatum papillomavirus 1 (EdPV1), NC_006951; Psittacus erithacus timneh papillomavirus (PePV1), NC_003973; Tursiops truncatus papillomavirus 1 (TtPV1), NC_011109; Odocoileus virginianus papillomavirus 1 (OvPV1), NC_001523; Rangifer tarandus papillomavirus (RtPV1, RtPV2), AF443292, KC810012.