Table 5.
Previously identified CRC susceptibility loci.
| SNP | Refa | Chromosome | Count Allele | CAFb | ORc (95%CId) |
|---|---|---|---|---|---|
| rs6691170 | 1 | 1q41 | G | 0.63 | 0.94 (0.92–0.97) |
| rs6687758 | 1 | 1q41 | A | 0.80 | 0.92 (0.89–0.94) |
| rs10936599 | 1 | 3q26.2 | C | 0.77 | 1.08 (1.04–1.10) |
| rs1321311 | 14 | 6p21 | A | 0.25 | 1.10 (1.07–1.13) |
| rs16892766 | 6 | 8q23.3 | A | 0.92 | 0.80 (0.76–0.84) |
| rs10505477 | 3 | 8q24 | A | 0.50 | 1.17 (1.12–1.23) |
| rs6983267 | 2–5 | 8q24 | G | 0.50 | 1.21 (1.18–1.24) |
| rs7014346 | 7 | 8q24 | A | 0.36 | 1.19 (1.15–1.23) |
| rs719725 | 3,13 | 9p24 | A | 0.62 | 1.07 (1.03–1.12) |
| rs10795668 | 6 | 10p14 | A | 0.31 | 0.89 (0.86–0.91) |
| rs3824999 | 14 | 11q13.4 | G | 0.51 | 1.08 (1.05–1.10) |
| rs3802842 | 7 | 11q23 | A | 0.71 | 0.90 (0.87–0.93) |
| rs7136702 | 1 | 12q13.13 | C | 0.68 | 0.94 (0.93–0.96) |
| rs11169552 | 1 | 12q13.13 | C | 0.73 | 1.09 (1.05–1.11) |
| rs4444235 | 8,9 | 14q22.2 | C | 0.46 | 1.09 (1.06–1.12) |
| rs1957636 | 8 | 14q22.2 | C | 0.59 | 0.92 (0.90–0.95) |
| rs16969681 | 8 | 15q13 | C | 0.91 | 0.84 (0.80–0.90) |
| rs4779584 | 8,10 | 15q13 | C | 0.82 | 0.87 (0.84–0.91) |
| rs11632715 | 8 | 15q13 | A | 0.48 | 1.12 (1.08–1.16) |
| rs9929218 | 9 | 16q22.1 | A | 0.30 | 0.91 (0.89–0.94) |
| rs4939827 | 7,11 | 18q21 | C | 0.48 | 0.83 (0.81–0.86) |
| rs10411210 | 9 | 19q13.1 | C | 0.90 | 1.15 (1.10–1.20) |
| rs961253 | 8,9 | 20p12.3 | A | 0.36 | 1.12 (1.09–1.15) |
| rs4813802 | 8,12 | 20p12.3 | G | 0.34 | 1.09 (1.06–1.12) |
| rs4925386 | 1,12 | 20q13.33 | C | 0.69 | 1.08 (1.05–1.10) |
Ref=references for identifying allele, and for ORs presented;
CAF=count allele frequency in European decent populations;
OR=odds ratio;
CI=confidence interval;
Only the first reference’s OR of the SNPs with more than one reference is shown in the table. The same situation applies for the Studies in Previous Publications column.
References: 1. Houlston et al. Nature Genetics 2010; 2. Tomlinson et al. Nature Genetics 2007; 3. Zanke et al. Nature Genetics 2007; 4. Haiman et al. Nature Genetics 2007; 5. Hutter et al. BMC Cancer 2010; 6. Tomlinson et al. Nature Genetics 2008; 7. Tenesa et al. Nature Genetics 2008; 8. Tomlinson et al. Nature Genetics 2011; 9. COGENT Nature Genetics 2008; 10. Jaeger et al. Nature Genetics 2008; 11. Broderick et al. Nature Genetics 2007; 12. Peters et al. Human Genetics 2011; 13. Kocarnik et al. CEBP 2010. 14. Dunlop et al. Nature Genetics 2012;