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. Author manuscript; available in PMC: 2013 Jul 17.
Published in final edited form as: J Pharm Sci. 2008 Nov;97(11):4670–4695. doi: 10.1002/jps.21378

Table 1. Summary of current NMR screening methods.

The table outlines the capabilities limitations and requirements of each method as it pertains to the examination of ligand binding to protein targets.

Protein-Target Observed Limits and Requirements Permits Identification of:
Target
MW
KD Isotopic
Labeling
Target
Binding
Site
Ligand
Binding
Epitope
Ligand
Selectivity in
a Mixture
aChemical Shift Perturbations b30 kDa 10−9-10−3 13C and/or 15N c
19F Relaxation and Chemical Shift Perturbations unlimited 10−6-10−3 19F d
Ligand Observed
Relaxation Rates unlimited e10−6-10−3 none
Diffusion Coefficients unlimited 10−6-10−3 none
Nuclear Overhauser Effects unlimited 10−6-10−3 none
Magnetization Transfer unlimited e10−6-10−3 none
19F Relaxation and Chemical Shift Perturbations unlimited e10−6-10−3 fnone
a

This method requires the use of two-dimensional 1H-15N HSQC or 1H-13C HSQC experiments.

b

Higher molecular weight protein-targets may be studied with use of advanced pulse sequences and/or isotopic labeling strategies.

c

Partial or complete resonance assignments are required.

d

19F resonances must be assigned if more than one aromatic residue occurs in the protein.

e

A wider range of binding affinities may be studied if the method is used as a competition based screening experiment.

f

Isotopic labeling is not required if the ligand naturally contains an 19F moiety.