Table 1. Summary of current NMR screening methods.
Protein-Target Observed | Limits and Requirements | Permits Identification of: | ||||
---|---|---|---|---|---|---|
Target MW |
KD | Isotopic Labeling |
Target Binding Site |
Ligand Binding Epitope |
Ligand Selectivity in a Mixture |
|
aChemical Shift Perturbations | b30 kDa | 10−9-10−3 | 13C and/or 15N | c✓ | ||
19F Relaxation and Chemical Shift Perturbations | unlimited | 10−6-10−3 | 19F | d✓ | ||
Ligand Observed | ||||||
Relaxation Rates | unlimited | e10−6-10−3 | none | ✓ | ✓ | |
Diffusion Coefficients | unlimited | 10−6-10−3 | none | ✓ | ||
Nuclear Overhauser Effects | unlimited | 10−6-10−3 | none | ✓ | ✓ | |
Magnetization Transfer | unlimited | e10−6-10−3 | none | ✓ | ✓ | |
19F Relaxation and Chemical Shift Perturbations | unlimited | e10−6-10−3 | fnone | ✓ |
This method requires the use of two-dimensional 1H-15N HSQC or 1H-13C HSQC experiments.
Higher molecular weight protein-targets may be studied with use of advanced pulse sequences and/or isotopic labeling strategies.
Partial or complete resonance assignments are required.
19F resonances must be assigned if more than one aromatic residue occurs in the protein.
A wider range of binding affinities may be studied if the method is used as a competition based screening experiment.
Isotopic labeling is not required if the ligand naturally contains an 19F moiety.