Table 3.

Expression quantitative trait loci enrichment analysis for single-nucleotide polymorphisms (SNPs) from primary meta-analysis by p-value cutoffs

	Cis-regulatory eQTL datasets (enrichment p value)
	Prefrontal cortex	Cortex	Cortex	Liver (Schadt	Skin (Ding	LPL (Stranger
	(Colantuoni et al²⁷)	(Myers et al²¹)	(Webster et al²²)	et al²³)	et al²⁴)	et al²⁵)
p<0·01	0·41	0·020	0·0028	0·37	0·22	0·11
p<0·1	0·11	0·020	0·000027	0·39	0·15	0·28
p<0·2	0·19	0·0030	0·000061	0·069	0·21	0·12
p<0·3	0·012	0·012	0·00034	0·013	0·02	0·066
p<0·4	0·023	0·0071	0·00030	0·045	0·044	0·10
p<0·5	0·023	0·043	0·0071	0·22	0·078	0·0068

Cross-disorder risk SNPs were defined as those meeting the p-value cutoffs shown in the left column in the primary meta-analysis of five disorders, and residing within 1 M bases from human reference hg18 genes.

LPL=lymphoblastoid cell lines.