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. 2013 Jul 17;8(7):e69401. doi: 10.1371/journal.pone.0069401

Figure 2. The runDE interface.

Figure 2

This shows the setup to compute the differential expression (DE) between tip and root using the edgeR method with default normalization. The results will be written into a database column called “TiRo”. Once all DE values are computed, the “All Pval Columns” can be selected followed by “Execute GOSeq” to compute the corresponding GO differential expression p-values.