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. 2013 Jul 17;8(7):e69401. doi: 10.1371/journal.pone.0069401

Table 2. Timing results for building a multiTCW database from 4 singleTCW databases.

MultiTCW Time Remarks
Load 4 databases 33 m 431,888 transcripts
ESTscan1 8 m 170,311 protein1
Run selfblast 5 h:40 m Using 24 CPUs
Run orthoMCL 18 m 18,184 clusters
Run transitive closure 1 m 7,767 clusters
Total 7 h:03 m MySQL database 1.6G
1

ESTscan does not produce protein sequences for all transcripts.