Table 2.
Protein name | Taxonomy | PDB code | Nres | %α | %β | Qreson (%) |
---|---|---|---|---|---|---|
ATC1776 | A. tumefaciens | 2JYA | 101 | 16.3 | 31.3 | 93.5 |
ATC2521 | A. tumefaciens | 2JQ4 | 83 | 84.3 | 0 | 94.4 |
ATC0727 | A. tumefaciens | 2K54 | 123 | 35.8 | 46.3 | 96 |
ATC1183 | A. tumefaciens | 2K2P | 64 | 45.3 | 23.4 | 89.2 |
DnaK suppressor protein | A. tumefaciens | 2KQ9 | 112 | 51.8 | 0 | 96 |
ATC0223 | A. tumefaciens | 2K7I* | 124 | 29.0 | 27.4 | 87.4 |
ATC0905 | A. tumefaciens | 2KNR | 118 | 32.3 | 27.1 | 97.2 |
ATC0852 | A. tumefaciens | 2KJZ* | 122 | 23.8 | 33.6 | 89.2 |
AF2351 | A. fulgidus | 2KKU | 139 | 22.3 | 29.5 | 87.7 |
CV0237 | C. violaceum | 2KP6 | 79 | 64.6 | 0 | 90.9 |
CV0863 | C. violaceum | 2×8N | 109 | 27.5 | 22.9 | 98.4 |
Zn finger protein YBIL | E. coli | 2KGO | 88 | 0 | 45.5 | 97.8 |
C-terminal oxidized NleG2-3 | E. coli | 2KKY | 102 | 33.3 | 15.7 | 96.3 |
EC0640 | E. coli | 2K8E | 116 | 26.7 | 31.0 | 92.7 |
C-terminal reduced NleG2-3 | E. coli | 2KKX | 102 | 28.4 | 24.5 | 96.3 |
HP0488 | H. pylori | 2JOQ | 86 | 34.1 | 24.2 | 96.2 |
Cbx4 | H. sapiens | 2K28 | 58 | 36.7 | 23.3 | 94.8 |
Cbx7 | H. sapiens | 2K1B | 55 | 27.3 | 32.7 | 94.4 |
Cul7-CPH | H. sapiens | 2JNG | 102 | 18.8 | 34.4 | 94.8 |
N-terminal Pirh2 | H. sapiens | 2K2C | 137 | 6.6 | 24.1 | 92.4 |
Cytochrome-b5-like domain HERC2 E3 ligase | H. sapiens | 2KEO | 92 | 57.6 | 16.3 | 93.5 |
Ub-like domain of NFATC2IP | H. sapiens | 2JXX | 78 | 24.4 | 34.6 | 93.6 |
Ub-like domain of ubiquilin 1 | H. sapiens | 2KLC | 79 | 27.9 | 32.9 | 90.8 |
Ub-like domain of Herpud2 | H. sapiens | 2KDB | 77 | 24.7 | 29.9 | 95.6 |
Ub-protein ligase E3A | H. sapiens | 2KR1 | 64 | 51.6 | 0 | 89.3 |
Usp7 Ub-like domain | H. sapiens | 2KVR | 128 | 37.5 | 14.8 | 93.9 |
FK506-binding protein | H. sapiens | 2KFV | 73 | 68.5 | 0 | 95.7 |
PA1076 | P. aeruginosa | 2K4V | 125 | 34.4 | 32.8 | 92.1 |
RP4601 | R. palustris | 2JN4 | 66 | 0 | 42.4 | 94.5 |
RPA3114 | R. palustris | 2JQ5 | 128 | 39.8 | 36.7 | 94.7 |
RPA1320 | R. palustris | 2IDA | 102 | 23.5 | 13.7 | 95.6 |
RP3384 | R. palustris | 2JTV | 65 | 58.5 | 23.1 | 90.4 |
YST0336 | S. cerevisiae | 2JYN | 146 | 56.9 | 5.5 | 92.1 |
SF3929 | S. flexneri | 2KO6 | 89 | 61.8 | 0 | 93.9 |
SSO0164 | S. solfataricus | 2KCO | 133 | 12.8 | 24.8 | 86 |
30S ribosomal protein S27A | T. acidophilum | 2K4X | 55 | 0 | 12.7 | 90 |
Secondary structure composition of each protein was calculated using PYMOL. Ub refers to ubiquitin; N refers to the total number of residues in the protein; Qassn is the percent completeness of assigned resonances (backbone and side chain 13C, 15N, 1H resonances). Structures that were calculated as dimers are represented by an asterisk