Table 2. Levels of within-subspecies and between-subspecies identity for shared genes.

Pairwise Gene Comparison	Subsp I/ Subsp I	Subsp I/ Subsp II	Subsp I/ Subsp II	Subsp I/ Subsp I	Subsp I B27/ Subsp II-D3	Subsp I/ Subsp I	Subsp I Subsp I	Subsp I/ SubspII
Gene	D1/D2	D2/D3	D1/D3	B27/B	B27/D3	B/D1	B/D2	B/D3
rmlB	99.5	95.7	95.6	99	95.8	99.5	99.6	95.7
rmlD	98.6	94.9	94.7	97.9	95.1	98.6	98.1	94.1
rmlA	98.6	93.8	94.1	98.6	93.8	98.6	98	94
rmlC	99.8	96.5	96.7	98.4	97.4	99.1	98.9	96.5
ddhD	99.7	96.3	96	99.3	96.2	99.1	99.4	96.1
ddhA	99.9	98.4	97.9	99.9	98.2	99.6	99.5	98.3
ddhB	99.5	97.8	98.5	99	98.1	99.7	99.4	98.6
ddhC	100	97.5	97.5	99.5	97.6	99.4	99.4	97.6
abe	-	-	-	99	-	-	-	-
prt	100	95.6	95.6	-	-	-	-	-
tyv	99.8	96.9	97.1	-	-	-	-	-
wzx	98.7	93.9	94.6	98.3	-	65	62	64.8
wbaV	99.6	93.7	93.9	98.6		61.9	61.8	61.8
wzy	-	56.2	-	-	96.3	-	-	-
wbaU	-	-	96	98.5	96	99.8	-	96
wbaN	76.7	74.2	97	98.9	96.3	100	76.7	97
manC	99.7	96.4	96.4	98.7	96.3	99.9	99.6	96.2
manB	98.7	94.6	94.7	98.1	94.6	99.9	98.7	94.8
wbaP	96.4	95.9	96.4	99.5	96.5	99.9	98.8	96.4