FIG. 2.

Bootscan plots and schematic representation of the MSM0720 near full-length genome's mosaic structure. (A) Bootscan plots of MSM0720 using CRF01_AE, CRF07_BC, and subtype G as subtype references. The parameters of SimPlot bootscan analysis were set as default except for a window size of 300 and step size of 10. The breakpoint positions refer to HXB2 coordinates located by the HIV Sequence Locator (www.hiv.lanl.gov/content/sequence/LOCATE/locate.html). (B) Genomic map of MSM0720. The mosaic map was generated using the Recombinant HIV-1 Drawing Tool (www.hiv.lanl.gov/content/sequence/DRAW_CRF/recom_mapper.html).