Table 6.

Transcripts significantly changed into the same direction by low temperature, low N and low P stress

			LOG2 FC stress vs control
OptiID	Parent 4a.53	Short description	Low T	Low N	Low P
OptiV1C13059	GRMZM2G038281	Glycosyl hydrolases family 35	−1.375	−1.633	−1.779
OptiV1C01796	GRMZM2G430936	Glycosyl hydrolases family 18	−2.416	−1.964	−1.302
OptiV1S19512	GRMZM2G052625	Glutathione S-transferase	−3.028	−2.607	−1.172
OptiV1S33411	GRMZM2G050307	SAM dependent carboxyl methyltransferase	−3.403	−1.785	−1.378
OptiV1S28200	GRMZM2G133996	SAM dependent carboxyl methyltransferase	−3.481	−1.774	−1.294
OptiV1S33603	GRMZM2G050321	SAM dependent carboxyl methyltransferase	−3.407	−1.725	−1.303
OptiV1C06941	GRMZM2G048904	GDSL-like Lipase/Acylhydrolase superfamily	−1.238	−1.545	−2.086
OptiV1C08466	GRMZM2G142386	cytosolic isoform of nitrate reductase	−1.203	−3.109	−1.166
OptiV1S19330	GRMZM2G076723	nitrate reductase	−1.190	−3.012	−1.201
OptiV1C15441	GRMZM2G110195	transmembrane amino acid transporter	−1.349	−1.785	−1.147
OptiV1S27277	GRMZM2G332660	calcium-dependent protein kinase	−2.708	−1.947	−2.072
OptiV1S18644	GRMZM2G075286	wall-associated kinase	−3.521	−5.376	−3.073
OptiV1S18504	GRMZM2G173710	histidine-containing phosphotransmitter	−3.184	−1.447	−2.076
OptiV1S27555	GRMZM2G401606	S-locus lectin protein kinase	−4.052	−2.573	−1.641
OptiV1C01433	GRMZM2G086066	Heavy metal transport/detoxification superfamily	−2.426	−2.280	−1.938
OptiV1S26323	GRMZM2G010920	myb-like HTH transcriptional regulator	−1.174	−2.835	−1.170
OptiV1C00704	GRMZM2G086231	2OG-Fe(II) oxygenase superfamily	−3.268	−4.826	−3.697
OptiV1C04996	GRMZM2G168552	abscisic stress-ripening, putative	−1.088	−1.102	−1.313
OptiV1C11463	GRMZM2G122954	endosomal targeting BRO1-like domain-containing protein	−1.399	−2.072	−1.815
OptiV1C02712	GRMZM2G166906	Glucose-methanol-choline (GMC) oxidoreductase	−4.346	−4.293	−1.252
OptiV1S19822	GRMZM2G079616	HXXXD-type acyl-transferase family protein	−2.505	−3.119	−1.238
OptiV1S26828	GRMZM2G057467	Cytochrome b561/ferric reductasetransmembrane domain	−2.315	−6.245	−3.414
OptiV1S34472	GRMZM2G428119	BTB-POZ and MATH domain 4	−2.438	−1.392	−1.525
OptiV1S24670	GRMZM2G073969	unknown	−4.009	−3.256	−1.747
OptiV1S19308	GRMZM2G134219	unknown	−1.834	−3.057	−1.950
OptiV1C14939	GRMZM2G470882	unknown	−3.374	−2.211	−1.400
OptiV1S18877	GRMZM2G439246	unknown	−1.011	−1.636	−1.279
OptiV1C11114	GRMZM2G111324	Glucan endo-1,3-beta-D-glucosidase	1.738	1.529	1.098
OptiV1S18343	GRMZM2G090441	Glycosyl hydrolases family 18	5.732	2.414	1.432
OptiV1C04728	GRMZM2G062974	basic chitinase	1.656	2.002	2.282
OptiV1S31825	GRMZM2G046750	Bifunctional inhibitor/lipid-transfer protein	5.542	3.523	2.572
OptiV1C01291	GRMZM2G396212	Class-II DAHP synthetase family	1.621	1.162	1.804
OptiV1S28228	AC215201.3_FG005	chaperonin-60 alpha involved in Rubisco folding	1.847	1.664	1.363
OptiV1S23488	GRMZM2G116258	glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA2)	1.174	1.057	1.158
OptiV1S33616	GRMZM2G072569	Leucine-rich receptor-like protein kinase	1.061	1.359	1.324
OptiV1C17401	GRMZM2G017355	Mitochondrial transcription termination factor	1.142	1.179	1.208
OptiV1S23917	GRMZM2G171466	Transcription factor containing NAC and TS-N domains	1.146	1.582	1.391
OptiV1C00118	GRMZM2G403620	MYB transcription factor (rough sheath2)	3.127	1.987	1.818
OptiV1C02069	GRMZM2G132169	Multicopper oxidase/laccase	3.789	1.599	1.736
OptiV1C09392	GRMZM2G391042	Calcium transporting ATPase	1.357	1.057	1.201
OptiV1S19459	GRMZM2G120897	Actin filament-coating protein tropomyosin	5.247	1.336	1.461
OptiV1S30839	GRMZM2G150791	Ankyrin repeat	1.128	1.559	1.202
OptiV1C14068	GRMZM2G060029	Armadillo/beta-catenin-like repeats	2.081	2.121	4.472
OptiV1C03999	GRMZM2G154414	Cyclin-dependent kinase inhibitor family	2.470	2.813	1.220
OptiV1S20962	GRMZM2G143457	unknown	1.453	2.321	1.437
OptiV1C15394	GRMZM2G004349	VIRB2-interacting protein 1 (BTI1)	1.640	1.372	1.600
OptiV1C13551	GRMZM2G015603	alpha/beta hydrolase superfamily	3.798	2.658	2.490
OptiV1C10502	GRMZM2G095404	Peroxidase superfamily	5.299	3.578	2.478

The values represent log₂ data of fold changes between stressed and control samples. Transcripts appearing twice in the list but representing the same genome loci were reduced to one entry, transcripts without localization on the current genome (4a.53) were omitted. The complete list can be accessed in the Additional file 6: Table S5.