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Comparison of re-sequencing-derived with genotypes resulting from array-based genotyping. Non-reference sensitivity (NRS), considering all genotypes (phred-scaled quality score ≥ 0) (A). NRS, phred-scaled quality score ≥ 10 (B). Non-reference discrepancy (NRD), phred-scaled quality score ≥ 0 (C). NRD, phred-scaled quality score ≥ 10 (D). The grey and the blue symbols represent the NRS and NRD before and after Beagle imputation, respectively.
