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. 2013 Jun 27;8:16. doi: 10.1186/1748-7188-8-16

Table 1.

E. coli motifs

High conservation Low conservation
Name
 w∗
 N
 Name
 w∗
 N
Ada
 13
 4
 ArgR
 18
 35
CaiF
 16
 8
 DeoR
 16
 7
CueR
 19
 3
 FruR
 18
 18
IlvY
 21
 4
 Fur
 19
 99
LacI
 21
 3
 GntR
 20
 17
MalI
 12
 2
 MalT
 10
 20
MelR
 18
 11
 Nac
 15
 18
MetR
 13
 7
 RcsB
 14
 11
PurR
 16
 20
  
  
  
SoxR
 19
 2
  
  
  
TorR
 10
 10
  
  
  
XylR 18 4      

Summary of knownE. coli TFBS motifs used in tests with real data. For each motif, transcription factor name is given, along with known width (wx∗, bp) and number of motif occurrences (N).