Table 2.
Prokaryotic ChIP motifs
| Species | Name | w∗ | N |
|---|---|---|---|
|
E. coli |
CRP |
22 |
34 |
|
E. coli |
LexA |
20 |
25 |
|
E. coli |
PurR |
16 |
28 |
|
E. coli |
RutR |
16 |
19 |
|
V. cholerae |
Fur |
21 |
55 |
|
V. cholerae |
RpoN |
15 |
37 |
|
M. tuberculosis |
DosR |
18 |
24 |
|
M. tuberculosis |
LexA |
18 |
23 |
| B. subtilis | Spo0A | 12 | 94 |
Summary of known prokaryotic TFBS motifs used in tests with real data. For each motif, the species and transcription factor name is given, along with known width (w∗, bp) and number of motif occurrences (N).