Table 4.

Number of differentially bound regions at 5% FDR; at T30, where technical replicates are available, the results are given both for the case where the joint model of replicates is used (first column) and for the case where the union of two separate analysis is used (CBPT301 versus p300T301 and CBPT302 versus p300T302, second column)

Conditions	# Regions bound only by CBP		# Regions bound only by p300
Wang	3069		142
T0	9		2726
	Joint analysis	Separate	Joint analysis	Separate
T30	6126	118	9843	3402