Table 1.
|
Marioni data |
Yale data |
Encode data |
|||
---|---|---|---|---|---|---|
(size:3.7 M, length:36 bp) |
(size:39 M, length:74 bp) |
(size:213 M, length:76 bp) |
||||
Methods | Time | Memory | Time | Memory | Time | Memory |
NURD |
36 s |
60 MB |
3 m 37 s |
60 MB |
19 m 27 s |
60 MB |
Cufflinks |
1 h 31 m 25 s |
417 MB |
2 h 43 m 17 s |
776 MB |
3 h 55 m 49 s |
2.58GB |
RSEM |
1 h 38 m 11 s |
832 MB |
9 h 00 m 55 s |
3.65GB |
26 h 13 m 6 s |
10.3GB |
eXpress |
17 m 50s |
1.44GB |
41 m 17 s |
1.44GB |
1 h 41 m 26 s |
1.44GB |
eXpress* |
1 h 1 m 5 s |
1.44GB |
3 h 42 m 41 s |
1.44GB |
13 h 26 m 39 s |
1.44GB |
eXpress** | 1 h 45 m 54 s | 1.44GB | 6 h 51 m 13 s | 1.44GB | 25 h 3 m 41 s | 1.44GB |
eXpress: results with the default parameters.
eXpress*: results by specifying option –B with 10.
eXpress**: results by specifying option –B with 20.