Skip to main content
. Author manuscript; available in PMC: 2014 Apr 9.
Published in final edited form as: Biochemistry. 2013 Mar 29;52(14):2388–2401. doi: 10.1021/bi301217t

Table 1. FRET distances compared with distances predicted from X-ray Crystal Structures.

FRET pair SecA Domain EFRETa Distance (Å)b Distance predicted from Crystal Structure (Å)
1M6Nc 2IBMd 2IPCe 2FSFf 1NL3g
59IAE-59IAN
59AF568-59AF647
NBF1 0.38 ± 0.09
∼1
33 ± 10
≤ 44 (0.5 R0)
20 91 83 93 106
402IAE-402IAN
402AF488-402AF568
NBF1 0.19 ± 0.10
0.31 ± 0.03
43 ± 25
54 ± 14
16 43 38 68 55
59IAE-402IAN NBF1-NBF1 0.40 ± 0.16 33 ± 15 30 66 61 81 81
340IAE-340IAN
340AF488-340AF568
PPXD 0.12 ± 0.08
0.78 ± 0.08
≥32 (1.4 R0)
45 ± 11
50 50 30 21 69
427IAE-427IAN
427AF488-427AF568
427AF568-427AF647
NBF2 0.10 ±.09
0.19 ± 0.02
0.25 ± 0.02
≥48 (1.4 R0)
65 ± 17
68 ± 17
71 35 19 64 44
458AF488-458AF568 NBF2 0.43 ± 0.05 62 ± 15 63 11 49 27 36
470IAE-470IAN
470AF488-470AF568
470AF568-470AF647
NBF2 0.08 ±0.01
0.24 ± 0.02
0.35 ± 0.03
≥49 (1.4 R0)
72 ± 16
87 ± 22
101 13 62 50 55
506AF488-506AF568
506AF568-506AF647
NBF2 0.30 ±0.03
0.70 ± 0.07
71 ± 16
67 ± 17
63 31 48 24 53
696IAE-696IAN
696AF488-696AF548
696AF568-696AF647
HWD 0.08 ± 0.02
0.23 ± 0.02
0.59 ± 0.06
≥53 (1.4 R0)
76 ± 18
73 ± 18
89 78 25 128 120
734AF568-734AF647 HWD 0.43 ± 0.04 85 ± 21 91 94 51 140 127
a

FRET efficiency (EFRET) was measured by the quenching of the donor fluorescence intensity as described.

b

The donor-acceptor distance (R) was calculated as described.

c

Coordinates for the antiparallel dimeric B. subtilis SecA crystal structure (PDB ID: 1M6N) were generously provided by John Hunt.

d

Zimmer et al. B. subtilis structure (PDB ID: 2IBM).

e

Vassylyev et al. T. thermophilus structure (PDB ID: 2IPC).

f

Papanikolau et al. E. coli structure (PDB ID: 2FSF). This structure lacked resolution in the PPXD, predicted distance measurements were obtained by modeling the PPXD based on the B. subtilis structure. Coordinates generously provided by Anastasios Economou.

g

Sharma et al. M. tuberculosis structure (PDB ID: 1NL3).