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. 2012 Sep 28;3(10):1169–1181. doi: 10.18632/oncotarget.600

Table 1. Primary screen hit list.

Accession number Gene symbol Gene name p-value t-statistic FDR Relative cytotoxicity
NM_000076 CDKN1C cyclin-dependent kinase inhibitor 1C (p57, Kip2) 6.3E-05 −4.00 0.02 5.4
NM_005456 JIP1 (MAPK8IP1) mitogen-activated protein kinase 8 interacting protein 1 1.0E-04 −3.89 0.02 8.6
NM_212469 CHKA choline kinase alpha 1.1E-03 −3.26 0.12 5.7
NM_001319 CSNK1G2 casein kinase 1, gamma 2 3.7E-03 −2.90 0.22 2.7
NM_001570 IRAK2 interleukin-1 receptor-associated kinase-like 2 3.8E-03 −2.89 0.22 8.0
NM_001381 DOK1 docking protein 1, 62kDa (downstream of tyrosine kinase 1) 5.3E-03 −2.79 0.28 4.4
NM_001291 CLK2 CDC-like kinase 2 7.1E-03 −2.69 0.35 1.9
NM_020421 ADCK1 aarF domain containing kinase 1 9.1E-03 −2.61 0.41 1.3
NM_031284 ADP-GK ADP-dependent glucokinase 0.011 −2.55 0.44 2.0
NM_004196 CDKL1 cyclin-dependent kinase-like 1 (CDC2-related kinase) 0.011 −2.54 0.44 3.6
NM_000586 IL2 interleukin 2 0.013 −2.48 0.49 5.2
NM_014826 CDC42BPA(a) CDC42 binding protein kinase alpha (DMPK-like) 0.016 −2.42 0.49 11.1
NM_052947 HAK (ALPK2) alpha-kinase 2 0.016 −2.42 0.49 1.1
NM_198452 PNCK pregnancy up-regulated non-ubiquitously expressed CaM kinase 0.020 −2.33 0.54 3.0
NM_001025778 VRK3 vaccinia related kinase 3 0.021 −2.31 0.55 1.9
NM_001001329 PRKCSH protein kinase C substrate 80K-H 0.024 −2.26 0.61 7.0

The top 16 genes that, upon silencing elicit a statistically significant (p < 0.025) increase in sensitivity to doxorubicin treatment in osteosarcoma cells with corresponding p-values and t-statistics for treatment effect, and false discovery rates for each gene. Relative cytotoxicity is defined as doxorubicin plus siRNA effect/doxorubicin effect.

a excluded from further analysis due to high direct cytotoxicity upon siRNA treatment alone