Table 1. Primary screen hit list.
Accession number | Gene symbol | Gene name | p-value | t-statistic | FDR | Relative cytotoxicity |
---|---|---|---|---|---|---|
NM_000076 | CDKN1C | cyclin-dependent kinase inhibitor 1C (p57, Kip2) | 6.3E-05 | −4.00 | 0.02 | 5.4 |
NM_005456 | JIP1 (MAPK8IP1) | mitogen-activated protein kinase 8 interacting protein 1 | 1.0E-04 | −3.89 | 0.02 | 8.6 |
NM_212469 | CHKA | choline kinase alpha | 1.1E-03 | −3.26 | 0.12 | 5.7 |
NM_001319 | CSNK1G2 | casein kinase 1, gamma 2 | 3.7E-03 | −2.90 | 0.22 | 2.7 |
NM_001570 | IRAK2 | interleukin-1 receptor-associated kinase-like 2 | 3.8E-03 | −2.89 | 0.22 | 8.0 |
NM_001381 | DOK1 | docking protein 1, 62kDa (downstream of tyrosine kinase 1) | 5.3E-03 | −2.79 | 0.28 | 4.4 |
NM_001291 | CLK2 | CDC-like kinase 2 | 7.1E-03 | −2.69 | 0.35 | 1.9 |
NM_020421 | ADCK1 | aarF domain containing kinase 1 | 9.1E-03 | −2.61 | 0.41 | 1.3 |
NM_031284 | ADP-GK | ADP-dependent glucokinase | 0.011 | −2.55 | 0.44 | 2.0 |
NM_004196 | CDKL1 | cyclin-dependent kinase-like 1 (CDC2-related kinase) | 0.011 | −2.54 | 0.44 | 3.6 |
NM_000586 | IL2 | interleukin 2 | 0.013 | −2.48 | 0.49 | 5.2 |
NM_014826 | CDC42BPA(a) | CDC42 binding protein kinase alpha (DMPK-like) | 0.016 | −2.42 | 0.49 | 11.1 |
NM_052947 | HAK (ALPK2) | alpha-kinase 2 | 0.016 | −2.42 | 0.49 | 1.1 |
NM_198452 | PNCK | pregnancy up-regulated non-ubiquitously expressed CaM kinase | 0.020 | −2.33 | 0.54 | 3.0 |
NM_001025778 | VRK3 | vaccinia related kinase 3 | 0.021 | −2.31 | 0.55 | 1.9 |
NM_001001329 | PRKCSH | protein kinase C substrate 80K-H | 0.024 | −2.26 | 0.61 | 7.0 |
The top 16 genes that, upon silencing elicit a statistically significant (p < 0.025) increase in sensitivity to doxorubicin treatment in osteosarcoma cells with corresponding p-values and t-statistics for treatment effect, and false discovery rates for each gene. Relative cytotoxicity is defined as doxorubicin plus siRNA effect/doxorubicin effect.
a excluded from further analysis due to high direct cytotoxicity upon siRNA treatment alone