. Author manuscript; available in PMC: 2014 Jun 1.

Published in final edited form as: Exp Hematol. 2013 Feb 19;41(6):518–529.e5. doi: 10.1016/j.exphem.2013.02.006

Table 2.

Clonal Tcrb gene rearrangements in tumors from Hoxa9 mice.

Subclone	V segment	V	N	D	N	J	J segment
1138spl-4	*V11S1*	TGCAAGCAGCTTAga*	ATCT	GGGGC	GCT	AGTCAAAACACCTTG	*J2S4*
1138spl-5	*V11S1*	TGCAAGCAGCTTAga	ATCT	GGGGC	GCT	AGTCAAAACACCTTG	*J2S4*
1138spl-6	*V11S1*	TGCAAGCAGCTTAga	ATCT	GGGGC	GCT	AGTCAAAACACCTTG	*J2S4*
1138spl-7	*V11S1*	TGCAAGCAGCTTAga	ATCT	GGGGC	GCT	AGTCAAAACACCTTG	*J2S4*
1138spl-10	*V11S1*	TGCAAGCAGCTTAga	ATCT	GGGGC	GCT	AGTCAAAACACCTTG	*J2S4*
1077thy-4	*V6S1*	GTGCCAGCAGTATAg	AGGGTA	GGGA		ctCCTATGAACAAGT	*J2S7*
1077thy-7	*V6S1*	GTGCCAGCAGTATAg	AGGGTA	GGGA		ctCCTATGAACAAGT	*J2S7*
1077thy-3	*V6S1*	GTGCCAGCAGTATAg	AGGGTA	GGGA		ctCCTATGAACAAGT	*J2S7*
1077thy-5	*V6S1*	GTGCCAGCAGTATAg	AGGGTA	GGGA		ctCCTATGAACAAGT	*J2S7*
1077thy-10	*V6S1*	GTGCCAGCAGTATAg	AGGGTA	GGGA		ctCCTATGAACAAGT	*J2S7*
1118LN-1	*V6S1*	GTGCCAGCAGTatag	CCA	GGACAGGGG	TA	TTCTGGAAAATACGC	*J1S3*
1118LN-2	*V8S2*	GTGCCAGCGGTGAtg	AG			ctcctATGAACAGTA	*J2S7*
1118LN-3	*V2S1*	CACCTGCAGTGcaga	GACA	GGGA	GGG	ctcctatGAACAGTA	*J2S7*
1118LN-9	*V8S2*	GTGCCAGCGGTGAtg	AG			ctcctATGAACAGTA	*J2S7*
1118LN-10	*V8S3*	GTGCCAGCAgtgatg	CC	GGACTGGGGGGGC	GC	agtGCAGAAACGCTG	*J2S3*
1118LN-11	*V8S2*	GTGCCAGCGGTGAtg		GG		ctccTATGAACAGTA	*J2S7*
1118LN-12	*V8S2*	GTGCCAGCGGTGAtg	AG			ctcctATGAACAGTA	*J2S7*
1118LN-13	*V2S1*	CACCTGCAGTGCAGa	TCC	GGGACAGGG	TGG	ttcctataATTCGCC	*J1S6*
1118LN-14	*V6S1*	GTGCCAGCAGTAtag	GC	GACTGGGGGGGG		ctccTATGAACAGTA	*J2S7*
1118LN-15	*V8S2*	GTGCCAGCGGTGAtg	AG			ctcctATGAACAGTA	*J2S7*
1125thy-1	*V6S1*	GTGCCAGCAGTATAG	A	GGGA	GG	cAAACACCGGGCAGC	*J2S2*
1125thy-2	*V6S1*	GTGCCAGCAGTATAG	A	GGGA	GG	cAAACACCGGGCAGC	*J2S2*
1125thy-5	*V6S1*	GTGCCAGCAGTATAG	A	GGGA	GG	cAAACACCGGGCAGC	*J2S2*
1125thy-6	*V6S1*	GTGCCAGCAGTATAG	A	GGGA	GG	cAAACACCGGGCAGC	*J2S2*
1125thy-8	*V6S1*	GTGCCAGCAGTATAG	A	GGGA	GG	cAAACACCGGGCAGC	*J2S2*