Table 1.
List of all primers used in this study, with sequence, respective GenBank accession number, amplicon length, and reference
| GenBank accession number | Primer sequence (5′–3′) | Amplicon length | Reference | |
|---|---|---|---|---|
| mRNA | ||||
| pan-BDNF | NM_001270638 | CCATAAGGACGCGGACTTGTAC | 121 | Tsankova et al., 2004 |
| AGACATGTTTGCGGCATCCAGG | ||||
| BDNF_exI | EF125675 | CAGGACAGCAAAGCCACAAT | 95 | Wei et al., 2010 |
| GCCTTCATGCAACCGAAGTA | ||||
| BDNF_exIV | EF125679 | GCTGCCTTGATGTTTACTTTGA | 144 | Wei et al., 2010 |
| CGTGGACGTTTGCTTCTTTC | ||||
| BDNF_exVI | EF125680 | GATCCGAGAGCTTTGTGTGG | 131 | Wei et al., 2010 |
| CGTGGACGTTTGCTTCTTTC | ||||
| BDNF_exIXa | EF125690 | GTCTCTGCTTCCTTCCCACA | 124 | Wei et al., 2010 |
| CGTGGACGTTTGCTTCTTTC | ||||
| TrkB.FL | M55291 | TATGCTGTGGTGGTGATTGC | 158 | Wei et al., 2010 |
| TTGGAGATGTGGTGGAGAGG | ||||
| TrkB.T1 | M55292 | GGCAACAGTAGTCCCAGGAG | 155 | Wei et al., 2010 |
| AGTTGGCGAGACATTCCAAG | ||||
| KAT2B (PCAF) | XM_003750617 | GCTTTACAGCACGCTCAAGA | 71 | Bousiges et al., 2010 |
| GTTCCATGAAGGGCCAAG | ||||
| KAT5 (Tip60) | NM_001005872 | ACAATGTGGCCTGCATCTT | 96 | Bousiges et al., 2010 |
| CTTCTACTTTCGAGAGTTCATAGCTG | ||||
| CREBBP (CBP) | NM_133381 | GACCAAGATGGGGATGACTG | 206 | Hollis et al., 2011 |
| CCACTGATGTTTGCAACTGG | ||||
| Mll1 | XM_003750506 | CACCCCTGCGGTCCAAGCTC | 136 | Own design |
| GCGCGATCCGTTGCTTTGGC | ||||
| Kdm3a | NM_175764 | CGTGGCACAGCTGCCCAAGT | 198 | Own design |
| GGCAGCCACAAGCCAATCGC | ||||
| NADH | EU10471 | CTATTAATCCCCGCCTGACC | 71 | Own design |
| GGAGCTCGATTTGTTTCTGC | ||||
| Genomic DNA | ||||
| BDNF_P6 | NW_047673 | TGCAGGGGAATTAGGGATAC | 166 | Tsankova et al., 2004 |
| TCTTCGGTTGAGCTTCGATT | ||||
| BSP | ||||
| BDNF_P6 | NW_047673 | TAGGTATAGAGTTTTGGGGTTAA | 273 | Own design |
| AACACCCAAAACTCAACC |
BSP, Bisulfite-PCR.