Table 1. Genetic events detected in the peripheral blood of ISKS probands.
Case | Genetic variant TP53 | Amino acid change | Mutation type | Condel23,24 | Reported somatic cases22 * | Reported germline cases22 * | Mutant allele present in tumour | Heterozygosity in tumour | Pathogenic |
Putative germline | |||||||||
1 | c.72del | p.Lys24AsnfsX20 | frameshift | NA | 0 | 0 | yes | LOH | yes |
2 | c.586C>T | p.Arg196X | nonsense | NA | 241 | 13 | yes | LOH | yes |
3 | c.559+1G>T | exon skipping | splice site | NA | 10 | 0 | yes | LOH | yes |
4 | c.329G>C | p.Arg110Pro | missense | del | 15 | 0 | yes | LOH | putative |
5 | c.783-1G>A | exon skipping | splice site | NA | 7 | 0 | yes | No LOH | yes |
6 | c.700T>C | p.Tyr234His | missense | del | 33 | 0 | yes | LOH | putative |
7 | c.853G>A | p.Glu285Lys | missense | del | 186 | 5 | yes | LOH | yes |
8 | c.997C>T | p.Arg333Cys | missense | del | 0 | 0 | yes | unknown | putative |
9 | c.473G>A | p.Arg158His | missense | del | 113 | 9 | yes | LOH | yes |
10 | c.877G>T | p.Gly293Trp | missense | del | 6 | 2 | yes | LOH | yes |
11 | c.847C>T | p.Arg283Cys | missense | del | 29 | 10 | yes | No LOH | yes |
12 | c.586C>T | p.Arg196X | nonsense | NA | 241 | 13 | yes | No LOH | yes |
13 | c.826_840del | p.Ala276_Arg280del | frameshift | NA | 1 | 0 | unknown | unknown | yes |
14 | c.843C>A | p.Asp281Glu | missense | del | 28 | 0 | yes | No LOH | putative |
15 | c.841G>A | p.Asp281Asn | missense | del | 37 | 4 | yes | No LOH | yes |
16 | c.469G>A | p.Val157Ile | missense | del/neut | 19 | 0 | yes | No LOH | putative |
17 | c.835G>A | p.Gly279Arg | missense | del | 8 | 0 | yes | No LOH | putative |
Putative somatic | |||||||||
18 | c.532C>G | p.His178Asp | missense | del | 9 | 0 | yes | LOH | yes |
19 | whole gene del | - | deletion | NA | 0 | 1 | - | - | yes |
20 | whole gene del | - | deletion | NA | 0 | 1 | - | - | yes |
Database version R16 November, 2012; del: deleterious; neut: neutral; FS: frame shift; LOH: loss of heterozygosity; NA: not applicable. The assignment of pathogenicity was performed as outlined in supplementary Figure 3.