Table 2.Fungal taxa used for phylogenetic analysis with GenBank accession numbers for small subunit (SSU) and large subunit (LSU) sequences, including their main characteristics.
| Ingroup | GenBank accession no. (SSU, LSU) | Origin (substrate, country) | Main characteristics | Reference |
|---|---|---|---|---|
| Class Sordariomycetes | ||||
| Cainia graminis | AF431948, AF431949 | Sesleria albicans, France | Stromatic perithecial, unitunicate with pore, saprophytic, plant parasitic or endophytic | Lumbsch et al. (2005) |
| Chaetomium globosum | AB048285, AY346272 | Indoor environment, Germany | Huhndorf et al. (2004), Okane et al. (2001) | |
| Diatrype disciformis | DQ471012, DQ470964 | Decayed wood, Netherlands | Spatafora et al. (2006) | |
| Hypocrea americana | AY544693, AY544649 | Fomitopsis pinicola, USA | Lutzoni et al. (2004) | |
| Sordaria fimicola | AY545724, AY545728 | Dung, Canada | Cai et al. (2006) | |
| Xylaria acuta | AY544719, AY544676 | Decayed wood, USA | Rogers (1984) | |
| Xylaria hypoxylon | AY544692, AY544648 | Downed rotting wood, USA | Spatafora et al. (2006) | |
| Class Leotiomycetes | ||||
| Botryotinia fuckeliana | AY544695, AY544651 | Apothecial or cleistothecial, unitunicate and inoperculate, saprophytic, plant parasitic, some species known only anamorphic i.e. Collophora | Hirschhauser & Frohlich (2007) | |
| Bulgaria inquinans | DQ471008, DQ470960 | Germany | Spatafora et al. (2006) | |
| Collophora rubra | GQ154628, GQ154608 | Wood necrosis close to pruning wound, South Africa | Damm et al. (2010) | |
| Crinula calciiformis | AY544729, AY544680 | Lutzoni et al. (2004) | ||
| Monilinia fructicola | AY544724, AY544683 | Fruit, USA | Fulton & Brown (1997) | |
| Neofabraea malicorticis | AY544706, AY544662 | Apples, USA | Lutzoni et al. (2004) | |
| Pezicula carpinea | DQ471016, DQ470967 | Carpinus caroliniana, Canada | Spatafora et al. (2006) | |
| Potebniamyces pyri | DQ470997, DQ470949 | Cankered bark, USA | Spatafora et al. (2006) | |
| Class Lecanoromycetes | ||||
| Diploschistes thunbergianus | AF274112, AF274095 | Australia | Apothecial, unitunicate, rostrate asci, mostly lichenized | Lumbsch et al. (2005) |
| Lobaria scrobiculata | AY584679, AY584655 | USA | Lutzoni et al. (2004) | |
| Trapella placodioides | AF119500, AF274103 | Wall, UK | Lumbsch et al. (2005) | |
| Class Lichinomycetes | ||||
| Lempholemma polyanthes | AY548805, AF356691 | USA | Apothecial, fissitunicate, lichenized | Lutzoni et al. (2004) |
| Peltula auriculata | DQ832332, DQ832330 | Miadlikowska et al. (2006) | ||
| Peltula umbilicata | DQ782887, AF356689 | Miadlikowska et al. (2006) | ||
| Class Eurotiomycetes | ||||
| Eremascus albus | M83258, AY004345 | Dried fruit, UK | Cleistothecial, non-fissitunicate, saprophytic or plant parasitic | Berbee & Taylor (1992) |
| Eurotium rubrum | U00970, AY004346 | Lumbsch et al. (2005a) | ||
| Penicillium expansum | DQ912698, AF003359 | Fruit, USA | Seifert & Louis-Seize (2000) | |
| Exophiala dermatitidis | DQ823107, DQ823100 | Human, USA | James et al. (2006) | |
| Glyphium elatum | AF346419, AF346420 | Salix, USA | Lindemuth et al. (2001) | |
| Ramichloridium anceps | DQ823109, DQ823102 | Soil under Thuja plicata, Canada | James et al. (2006) | |
| Class Dothideomycetes | ||||
| Order Botryosphaeriales | ||||
| Botryosphaeria ribis | DQ678000, DQ678053 | Ribes, USA | Pseudothecial, fissitunicate asci, saprophytic or plant parasitic | Schoch et al. (2006) |
| Botryosphaeria stevensii | DQ678012, DQ678064 | Fraxinus excelsior, Netherlands | Schoch et al. (2006) | |
| Guignardia bidwellii | DQ678034, DQ678085 | Parthenocissus tricuspidata | Schoch et al. (2006) | |
| Order Capnodiales | ||||
| Catenulostroma abetis | DQ678040, DQ678092 | Abies, Germany | Pseudothecial, fissitunicate asci, saprophytic or plant parasitic | Schoch et al. (2006) |
| Cercospora beticola | DQ678039, DQ678091 | Beta vulgaris, Italy | Schoch et al. (2006) | |
| Microxyphium citri | AY016340, AY004337 | Fruit of Citrus sinensis, Spain | Lumbsch et al. (2005) | |
| Mycosphaerella punctiformis | DQ471017, DQ470968 | Dead fallen leaves of Quercus robur, Netherlands | Spatafora et al. (2006) | |
| Scorias spongiosa | DQ678024, DQ678075 | Aphid | Schoch et al. (2006) | |
| Order Dothideales | ||||
| Aureobasidium pullulans | DQ471004, DQ470956 | Fruit of Vitis vinifera, France | Pseudothecial, fissitunicate asci, pseudoparaphyses absent, mainly saprophytic | Spatafora et al. (2006) |
| Delphinella strobiligena | AY016341, AY016358 | Cone of Pinus halepensis, Greece | Lumbsch & Lindemuth (2001) | |
| Discosphaerina fagi | AY016342, AY016359 | Leaf of Populus, UK | Lumbsch & Lindemuth (2001) | |
| Dothidea ribesia | AY016343, AY016360 | Cult of Ribes, Switzerland | Lumbsch et al. (2005) | |
| Stylodothis puccinioides | AY016353, AY004342 | Viburnum lantana, Switzerland | Lumbsch et al. (2005) | |
| Order Myriangiales | ||||
| Cladosporium cladosporioides | DQ678004, DQ678057 | Leaf of Arundo, England | Pseudothecial, fissitunicate globose asci, non-ostiolar, saprophytic or plant parasitic | Schoch et al. (2006) |
| Davidiella tassiana | DQ678022, DQ678074 | Human skin, Netherlands | Schoch et al. (2006) | |
| Elsinoe centrolobi | DQ678041, DQ678094 | Centrolobium robustum, Brazil | Schoch et al. (2006) | |
| Myriangium duriaei | AY016347, DQ678059 | Chrysomphalus aonidium, Argentina | Lumbsch & Lindemuth (2001) | |
| Order Pleosporales | ||||
| Arthopyrenia salicis | AY538333, AY538339 | Bark of Salix, Netherlands | Perithecoid pseudothecial, ostiolar, non-lichenized or lichenized with fissitunicate asci and pseudoparaphyses present | Lumbsch et al. (2005) |
| Cucurbitaria elongata | DQ678009, DQ678061 | Cytisus sessilifolius, France | Schoch et al. (2006) | |
| Dendrographa leucophaea | AY548803, AY548810 | Lutzoni et al. (2004) | ||
| Lecanactis abietina | AY548805, AY548812 | Lutzoni et al. (2004) | ||
| Neotestudina rosatii | DQ384069, DQ384107 | Seed of Cuminum cyminum imported from India, Japan | Kruys et al. (2006) | |
| Pleospora herbarum | DQ247812, DQ247804 | Leaf of Medicago sativa, India | Schoch et al. (2006) | |
| Setosphaeria monoceras | AY016352, AY016368 | Lumbsch & Lindemuth (2001) | ||
| Trematosphaeria heterospora | AY016354, AY016369 | Iris, Switzerland | Lumbsch et al. (2005) | |
| Westerdykella cylindrica | AY016355, AY004343 | Cow dung, Kenya | Lumbsch et al. (2005) | |
| Order Incertae sedis, Family Tubeufiaceae | ||||
| Helicomyces lilliputeus | AY856942, AY856899 | Rotten dicotyledonous wood, USA | Pseudothecial, fissitunicate | Tsui & Berbee (2006) |
| Helicomyces roseus | DQ678032, DQ678083 | Submerged bark, Switzerland | Schoch et al. (2006) | |
| Tubeufia cerea | AY856947, AY856903 | Tsui & Berbee (2006) | ||
| Class Arthoniomycetes | ||||
| Arthonia dispersa | AY571379, AY571381 | Syringa vulgaris, Sweden | Fissitunicate, mostly lichenized | Lumbsch et al. (2005) |
| Dendrographa leucophaea | AY548803, AY548810 | Lutzoni et al. (2004) | ||
| Lecanactis abietina | AY548805, AY548812 | Lutzoni et al. (2004) | ||
| Unknown | ||||
| Gelatinomyces siamensis | Bambusa nutans, Thailand | Apothecial, aggregated, embedded in gelatinous ball | This study | |
| Isolate KKUK1 | JX219377, JX219381 | |||
| Isolate KKUK2 | JX219378, JX219382 | |||
| Outgroup Class Orbiliomycetes | ||||
| Orbilia auricolor | DQ471001, DQ470953 | Soil, UK | Apothecial, non-fissitunicate | Spatafora et al. (2006) |