Table 3.
Putative ORFs of plasmid pZGX01 from P. acidipropionici ATCC 4875
| ORF | Start position | Stop position | Residue of the protein | Potential function of the putative protein | Highest homology | % amino acid similarity |
|---|---|---|---|---|---|---|
| ORF1 | 623 | 18 | 302 | Double-stranded DNA binding protein | pKNR01 (Rhodococcus opacus) | 52 |
| ORF2 | 1075 | 1308 | 77 | DNA binding domain protein | RHH_1 (Kytococcus sedentarius) | 68 |
| ORF3 | 1292 | 1555 | 87 | DNA binding protein | RelE (Mobiluncus mulieris) | 54 |
| ORF4 | 2258 | 1620 | 212 | Recombinase | ORF3 (Rhodococcus erythropolis) | 34 |
| ORF5 | 2483 | 2316 | 55 | None | None | |
| ORF6 | 2696 | 3604 | 302 | Replicase | repA of pMEC2 (Micrococcus luteus) | 64 |
| ORF7 | 3604 | 3948 | 114 | Replication initiation protein | repB of pRGO1 (Propionibacterium acidipropionici) | 100 |
| ORF8 | 3945 | 4472 | 175 | None | None | |
| ORF9 | 4971 | 5594 | 207 | Propionicin SM1 | PpnA of pLME106 (Propionibacterium jensenii) | 100 |
| ORF10 | 5647 | 5973 | 108 | None | None | |
| ORF11 | 6132 | 6677 | 181 | Resolvase | PinR (Propionibacterium acidipropionici) | 99 |