Table 5.
Discovery of motifs by MEME and their matches to known JASPAR CORE plant transcription factor binding site database
| TF Name | Motifs | Sequence | Matched to known motif |
|---|---|---|---|
| NAC |
Motif1 |
G[AT]G[AG]G[AG]GA |
Zinc Finger |
| Motif2 |
C[AC]C[GA][TC][GA]CC |
Leucine Zipper |
|
| Motif3 |
TGGGCC |
Leucine Zipper |
|
| YABBY |
Motif1 |
CC[CA][TC]C[TA][CT]C |
Zinc Finger |
| Motif2 |
GA[AG]AGAAA |
Zinc Finger |
|
| Motif3 | CCCCAC | AP2 MBD-like |
Motifs: Short DNA sequences for TFs binding. These motifs were discovered by MEME software.
ChIP-Seq tags which fall in the promoter region have been identified. For promoter associated peaks, 250 bp sequences from both sides of peak summits have been retrieved. These 500 bp sequences for associated Glyma models were given as input in MEME software to identify common motifs.