Table 6.
ChIP-Seq and RNA-Seq data reveals genes potentially regulated by NAC transcription factor
| |
|
Stage 3 |
Stage 6 |
|
|
|
|---|---|---|---|---|---|---|
| Gene model | Motif | (RPKM) | (RPKM) | Regulation | P-value | Annotation |
| Glyma01g00980.1 |
Motif1 |
7.7 |
2.1 |
Down |
0.0013 |
RNA polymerase Rpb2 |
| Glyma01g38630.1 |
Motif1 |
2.2 |
0.15 |
Down |
1.23E-18 |
Cytochrome P450 |
| Glyma01g42840.1 |
Motif3 |
8.5 |
10.7 |
Up |
0.00032 |
Glutathione peroxidase |
| Glyma02g06730.1 |
Motif3 |
12.9 |
5.5 |
Down |
0.01164 |
Homeobox domain containing protein |
| Glyma02g37130.1 |
Motif2,3 |
0.17 |
0.45 |
Up |
0.00182 |
VQ motif containing protein |
| Glyma02g42990.1 |
Motif2 |
25.9 |
1.4 |
Down |
9.27E-15 |
Polyketide cyclase / dehydrase |
| Glyma02g45000.1 |
Motif3 |
11.8 |
4.4 |
Down |
0.01031 |
SNF2 family protein |
| Glyma03g05190.1 |
Motif2 |
2.8 |
0.23 |
Down |
3.37E-07 |
Ferroportin1 (FPN1) |
| Glyma04g08540.1 |
Motif2 |
14.9 |
1.7 |
Down |
9.49E-11 |
RBD/RNP domain containing protein |
| Glyma04g13490.1 |
Motif1 |
31.8 |
74.6 |
Up |
1.79E-06 |
Pectin methylesterase inhibitor |
| Glyma06g02640.1 |
Motif1 |
5.4 |
1.1 |
Down |
1.79E-08 |
Protein of unknown function |
| Glyma06g03070.1 |
Motif1 |
20.4 |
9.02 |
Down |
0.03693 |
Transcription initiation factor IIF |
| Glyma06g16700.1 |
Motif1 |
19.9 |
30.7 |
Up |
0.00936 |
GTP-binding protein |
| Glyma07g04690.1 |
Motif1 |
12.8 |
4.6 |
Down |
0.00608 |
No Functional Annotation |
| Glyma07g05700.2 |
Motif1 |
6.2 |
27.5 |
Up |
6.42E-12 |
No Functional Annotation |
| Glyma07g06660.1 |
Motif1 |
75.8 |
352 |
Up |
2.01E-17 |
No Functional Annotation |
| Glyma07g07950.1 |
Motif3 |
16.3 |
6.8 |
Down |
0.04714 |
DEAD/DEAH box helicase |
| Glyma07g38880.1 |
Motif2 |
10.8 |
2.1 |
Down |
6.23E-05 |
Adenosine/AMP deaminase |
| Glyma08g23850.1 |
Motif3 |
20.4 |
3.8 |
Down |
0.0001 |
RBD/RNP domain containing protein |
| Glyma10g32120.1 |
Motif1 |
1.1 |
0.21 |
Down |
2.42E-07 |
No Functional Annotation |
| Glyma12g09540.1 |
Motif1 |
9.2 |
3.2 |
Down |
0.01295 |
Sec23/Sec24 zinc finger |
| Glyma13g27730.1 |
Motif3 |
3.8 |
36.8 |
Up |
6.69E-18 |
No Functional Annotation |
| Glyma13g42330.1 |
Motif3 |
315 |
1129 |
Up |
8.19E-13 |
Lipoxygenase |
| Glyma15g18640.1 |
Motif1 |
10.7 |
6.4 |
Down |
4.28E-06 |
No Functional Annotation |
| Glyma16g05210.1 |
Motif1 |
3.4 |
1.2 |
Down |
0.02271 |
SET domain containing protein |
| Glyma16g27900.3 |
Motif1 |
1.1 |
0.01 |
Down |
3.73E-09 |
No Functional Annotation |
| Glyma19g02030.1 |
Motif2 |
1.7 |
3.5 |
Up |
0.00195 |
Phosphoglucose isomerase |
| Glyma19g42490.1 |
Motif1 |
1.6 |
0.31 |
Up |
1.55E-07 |
No Functional Annotation |
| Glyma20g24810.1 |
Motif1 |
9.4 |
0.06 |
Down |
5.66E-41 |
Cytochrome P450 |
| Glyma20g27710.1 |
Motif2 |
0.97 |
0.37 |
Down |
0.00576 |
Protein tyrosine kinase |
| Glyma20g28640.1 | Motif1 | 46.9 | 8.5 | Down | 9.98E-09 | Cupin domain containing protein |