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. 2013 Jul 23;8(7):e69135. doi: 10.1371/journal.pone.0069135

Table 1. The number of synonymous (dS) and non-synonymous (dN) substitutions per site for ABS, non-ABS and all sites in exon 2 of MHC class IIB (mean±SE); the value of Z-test of positive selection and probability (P) that positive selection acts on these sites.

dN±SE dS±SE dN/dS Z-test P
ABS 0.303±0.075 0.134±0.058 2.261 2.156 0.017
non-ABS 0.066±0.017 0.056±0.025 1.179 0.401 0.344
all sites 0.120±0.020 0.078±0.023 1.538 1.610 0.055

The analysis was conducted using the Nei-Gojobori model [93] with Jukes-Cantor correction. Standard errors were estimated by bootstrap method with 1000 replications. Z-test of positive selection was conducted in MEGA v5.03 [65]. P is considered significant at 5% level.