Table 1.
NPHS2 sequence variants identified in the Polish population of patients with steroid-resistant nephrotic syndrome (SRNS)
| Exon (intron) | Nucleotide change | Amino acid change | Effect | Genotype | Geographical distribution of the allele | Positive family history | Consanguinity | ||
|---|---|---|---|---|---|---|---|---|---|
| Homozygous | Compound heterozygous | Carrier | |||||||
| A. Nonsense and frameshift mutations | |||||||||
| 8 | c.948delT | p.Ala317Leufs*31 | Pathogenic | 0 | 1 | 0 | Central and Eastern Europe (Hungary, Poland, Germany) | None | None |
| Ruf et al. (2004); Kerti et al. (2013) | |||||||||
| 8 | c.1032delT | p.Phe344Leufs*5 | Pathogenic | 0 | 11 | 0 | Poland (Kashubian region), Germany | 10/11 AR (five families) | 1 |
| Hinkes et al. (2007) | |||||||||
| B. Missense variants | |||||||||
| 2 | c.322A>G | p.Ile108Val | Benign? | 0 | 0 | 1 | Novel | None | None |
| 3 | c.413G>A | p.Arg138Gln | Pathogenic | 4 | 0 | 1 | The most common in Europe (France, Germany, Italy, Switzerland, Spain, Hungary, Poland, Czech Republic) | 1/5 AR (one family) | None |
| Weber et al. (2004); Ruf et al. (2004); Caridi et al. (2009); Santín et al. (2011b); Kerti et al. (2013) | |||||||||
| 5 | c.622G>A | p.Ala208Thr | Pathogenic | 0 | 1 | 0 | The Netherlands, France, Poland | None | None |
| Löwik et al. (2003); Weber et al. (2004) | |||||||||
| 5 | c.686G>A | p.Arg229Gln | Risk factor | 2 | 14 | 8 | Polymorphism common in European populations | 15/24 AR (nine families) | 1 |
| Machuca et al. (2009) | |||||||||
| 5 | c.732T>C | p.(=) | Benign? | 0 | 0 | 1 | Novel | None | None |
| 7 | c.868G>A | p.Val290Met | Pathogenic | 0 | 1 | 1 | Central and Eastern Europe (Hungary, Poland, Germany), Turkey | None | None |
| Kerti et al. (2013) | |||||||||
| 8 | c.890C>T | p.Ala297Val | Pathogenic | 0 | 2 | 0 | Poland, Czech-American, North Africa | 2/2 AR (one family) | None |
| Tsukaguchi et al. (2002); Machuca et al. (2009) | |||||||||
| C. Splice-site variants | |||||||||
| 7/8 | c.873+1G>A | p.? | Pathogenic? | 1 | 0 | 0 | Novel | None | 1 |
AR autosomal recessive inheritance