Table 5.
Diversity estimates from 16S rRNA amplicon libraries of diffuse flow vent samples collected at 9°N East Pacific Rise (EPR) and Guaymas Basin (Guay) hydrothermal vent sites.
Group | #seqsa | Sobsb | Chao I | Chao I lcic | Chao I hcid | np shannon | Inverse simpson | Invsimpson lci | Invsimpson hci | simpson evenness |
---|---|---|---|---|---|---|---|---|---|---|
BACTERIA DIFFUSE FLOW VENT SPECIFIC OTUs | ||||||||||
EPR.4470 | 6810 | 305 | 334 | 317 | 377 | 4.24 | 25.19 | 24.05 | 26.44 | 0.083 |
EPR.4472 | 6380 | 275 | 301 | 287 | 328 | 4.00 | 23.05 | 22.03 | 24.16 | 0.084 |
EPR.4473 | 8080 | 303 | 356 | 330 | 408 | 4.17 | 24.39 | 23.27 | 25.63 | 0.081 |
EPR.4474 | 867 | 145 | 188 | 165 | 239 | 4.55 | 59.60 | 52.58 | 68.78 | 0.411 |
Guay.4476 | 653 | 77 | 104 | 88 | 145 | 3.33 | 13.17 | 11.74 | 14.99 | 0.171 |
Guay.4477 | 72 | 25 | 41 | 29 | 83 | 3.07 | 13.24 | 9.58 | 21.47 | 0.530 |
Guay.4478 | 1697 | 105 | 120 | 111 | 148 | 3.57 | 18.38 | 17.06 | 19.92 | 0.175 |
Guay.4479 | 387 | 57 | 78 | 64 | 117 | 3.45 | 20.03 | 17.68 | 23.11 | 0.351 |
Guay.4480 | 143 | 32 | 38 | 34 | 59 | 3.18 | 16.95 | 13.78 | 22.02 | 0.530 |
Guay.4481 | 23 | 13 | 18 | 14 | 41 | 2.89 | 16.87 | 10.26 | 47.45 | 1.297 |
Group | #seqs | Sobs | Chao I | Chao I lci | Chao I hci | np shannon | Inverse simpson | Invsimpson lci | invsimpson hci | simpson evenness |
ARCHAEA DIFFUSE FLOW VENT SPECIFIC OTUs | ||||||||||
EPR.4470 | 2043 | 220 | 224 | 221 | 236 | 4.79e | 41.14 | 35.74 | 48.45 | 0.187 |
EPR.4472 | 908 | 168 | 198 | 181 | 236 | 4.77 | 76.26 | 67.78 | 87.15 | 0.454 |
EPR.4473 | 1289 | 68 | 118 | 86 | 204 | 2.19 | 3.27 | 3.00 | 3.58 | 0.048 |
EPR.4474 | 767 | 86 | 105 | 93 | 136 | 3.21 | 8.04 | 7.02 | 9.41 | 0.094 |
Guay.4476 | 183 | 31 | 51 | 37 | 97 | 2.54 | 5.73 | 4.74 | 7.24 | 0.185 |
Guay.4477 | 102 | 19 | 31 | 22 | 73 | 2.21 | 4.18 | 3.19 | 6.06 | 0.220 |
Guay.4478 | 416 | 49 | 73 | 57 | 124 | 3.04 | 11.23 | 9.81 | 13.15 | 0.229 |
Guay.4479 | 1553 | 55 | 63 | 57 | 86 | 1.85 | 2.42 | 2.26 | 2.60 | 0.044 |
Guay.4480 | 60 | 20 | 38 | 24 | 95 | 2.80 | 9.37 | 6.62 | 15.97 | 0.468 |
Guay.4481 | 953 | 49 | 56 | 51 | 75 | 1.55 | 1.87 | 1.74 | 2.02 | 0.038 |
Sequences derived after subtraction of off-axis OTUs.
#seqs, number of 16S rDNA amplicon sequences.
Sobs, number of observed species.
Low confidence interval.
High confidence interval.
Bold values indicate sites where estimated diversity of Archaea exceed that of Bacteria.