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. 2013 Jul 24;4:182. doi: 10.3389/fmicb.2013.00182

Table 5.

Diversity estimates from 16S rRNA amplicon libraries of diffuse flow vent samples collected at 9°N East Pacific Rise (EPR) and Guaymas Basin (Guay) hydrothermal vent sites.

Group #seqsa Sobsb Chao I Chao I lcic Chao I hcid np shannon Inverse simpson Invsimpson lci Invsimpson hci simpson evenness
BACTERIA DIFFUSE FLOW VENT SPECIFIC OTUs
EPR.4470 6810 305 334 317 377 4.24 25.19 24.05 26.44 0.083
EPR.4472 6380 275 301 287 328 4.00 23.05 22.03 24.16 0.084
EPR.4473 8080 303 356 330 408 4.17 24.39 23.27 25.63 0.081
EPR.4474 867 145 188 165 239 4.55 59.60 52.58 68.78 0.411
Guay.4476 653 77 104 88 145 3.33 13.17 11.74 14.99 0.171
Guay.4477 72 25 41 29 83 3.07 13.24 9.58 21.47 0.530
Guay.4478 1697 105 120 111 148 3.57 18.38 17.06 19.92 0.175
Guay.4479 387 57 78 64 117 3.45 20.03 17.68 23.11 0.351
Guay.4480 143 32 38 34 59 3.18 16.95 13.78 22.02 0.530
Guay.4481 23 13 18 14 41 2.89 16.87 10.26 47.45 1.297
Group #seqs Sobs Chao I Chao I lci Chao I hci np shannon Inverse simpson Invsimpson lci invsimpson hci simpson evenness
ARCHAEA DIFFUSE FLOW VENT SPECIFIC OTUs
EPR.4470 2043 220 224 221 236 4.79e 41.14 35.74 48.45 0.187
EPR.4472 908 168 198 181 236 4.77 76.26 67.78 87.15 0.454
EPR.4473 1289 68 118 86 204 2.19 3.27 3.00 3.58 0.048
EPR.4474 767 86 105 93 136 3.21 8.04 7.02 9.41 0.094
Guay.4476 183 31 51 37 97 2.54 5.73 4.74 7.24 0.185
Guay.4477 102 19 31 22 73 2.21 4.18 3.19 6.06 0.220
Guay.4478 416 49 73 57 124 3.04 11.23 9.81 13.15 0.229
Guay.4479 1553 55 63 57 86 1.85 2.42 2.26 2.60 0.044
Guay.4480 60 20 38 24 95 2.80 9.37 6.62 15.97 0.468
Guay.4481 953 49 56 51 75 1.55 1.87 1.74 2.02 0.038

Sequences derived after subtraction of off-axis OTUs.

a

#seqs, number of 16S rDNA amplicon sequences.

b

Sobs, number of observed species.

c

Low confidence interval.

d

High confidence interval.

e

Bold values indicate sites where estimated diversity of Archaea exceed that of Bacteria.