Table 4. B. cenocepacia lxa locus and other genes upregulated under low oxygen concentration growth conditions.

Gene ID	Annotation	Fold change
Stress response
BCAL1648	Universal stress protein	3.5
BCAL2119	Universal stress protein	3.0
BCAM0050	Universal stress protein	16
BCAM0276a	Universal stress protein	59
BCAM0278a	Small heat shock/α-crystallin protein	240
BCAM0280a	Phospholipid-binding protein	221
BCAM0290a	Universal stress protein	105
BCAM0291a	Universal stress protein	165
BCAM0292a	Universal stress protein	202
BCAM0294a	Universal stress protein	167
BCAM0307a	Phospholipid-binding protein	89
BCAM0319a	Universal stress protein	21
BCAM1495b	Universal stress protein	55
BCAM1500	Universal stress protein	14
BCAM1829	Universal stress protein	44
Pentose turnover
BCAL1657	Ribose transport substrate-binding protein	7.5
BCAL1658	Ribose ABC transporter ATP-binding protein	8.8
BCAL1659	Ribose transport system, permease protein	2.9
BCAL1660	Ribose operon repressor	3.1
BCAL1661	Ribokinase	8.9
BCAM0310a	Ribonucleotide reductase, class II	15
BCAM0311a	Ribokinase	89
Amino-acid turnover
BCAL1796	Saccharopine dehydrogenase	152
BCAM0283a	Lysine decarboxylase	20
BCAM1111	Ornithine decarboxylase	30
BCAM1112	Biodegradative arginine decarboxylase	20
BCAM1113	Basic amino acid/polyamine antiporter	18
Fatty acid, organic acid and alcohol turnover
BCAM0286a	Alcohol dehydrogenase	40
BCAM0293a	Acetate kinase	75
BCAM0298a	Phosphate acetyl/butyryl transferase	116
BCAM0299a	Zinc-binding alcoholdehydrogenase	242
BCAM0312a	Polysaccharide deacetylase	46
BCAM1570b	Alcohol dehydrogenase	87
BCAM1581	Phosphoenolpyruvate carboxykinase	16
Storage polymer turnover
BCAM0296a	Acetoacetyl-CoA reductase	94
BCAM0297a	Polyhydroxyalkanoic acid synthase, class I	224
BCAL1249b	Polyhydroxy butyrate depolymerase	42
Electron transfer
BCAL1830	2-Nitropropane dioxygenase	66
BCAM0279a	Nitroreductase	43
BCAM0284a	Cytochrome c551/c552	146
BCAM0320a	Cytochrome b561	3.5
Membrane/transport
BCAM0281a	Sulphate transporter family protein	19
BCAM0302a	ABC transporter protein	3.8
BCAM0303a	ABC transporter protein	80
BCAM0304a	Transporter system transport protein	36
BCAM0305a	Outer membrane transport system protein	58
BCAM0318a	Cation-transporting ATPase	15
BCAM1571b	Ton-B-dependent receptor	3.6
Transcription and translation
BCAM0300	Metal-dependent RNase	30
BCAM0048	LysR family regulatory protein	13
BCAM0049	CRP family regulatory protein, Anr-related	77
BCAM0287a	CRP family regulatory protein, Anr-related	17
BCAM0288a	Two-component regulatory system, response regulator	3.7
BCAM0289a	Two-component regulatory system, sensor kinase	2.6
BCAM0322a	Two-component regulatory system, response regulator	3.8
BCAM0323a	Two-component regulatory system, sensor kinase	2.1
BCAM1114	LysR family regulatory protein	6.5
BCAM1351	Regulatory protein	210
BCAM1483	CRP family regulatory protein, Anr related	3.5
BCAm1484	Two-component regulatory system, response regulator protein	2.5
BCAM1493b	Two-component regulatory system, response regulator protein	3.2
BCAM1494b	Two-component regulatory system, sensor kinase protein	3.0
Protein turnover
BCAM0309a	ATP-dependent Zn protease	130
Hypothetical
BCAM1480-2b	Conserved hypothetical proteins	27–53
BCAM1496b	Conserved hypothetical protein	11

^alxa locus gene.

^bCo-regulated gene with a lxa motif sequence.