Table 1.
Comparison of the proportion of known repeats in SD13M with the values for the entire genome and average values for SDs
| Repeat | Ratio in SD13M (%) | Segmental duplication average (%) [18] | Whole genome average (%) [18] |
|---|---|---|---|
| DNA |
0.18 |
0.36 |
0.86 |
| LINE |
23.9 |
34.4 |
20.3 |
| Low_complexity |
0.82 |
0.58 |
0.79 |
| LTR |
18.3 |
19.5 |
10.2 |
| Satellite (MMSAT4) |
1.92 |
0.32 |
0.05 |
| Simple_repeat |
1.94 |
1.66 |
2.47 |
| SINE |
5.20 |
3.80 |
7.42 |
| snRNA |
0.00 |
0.01 |
0.01 |
| tRNA |
0.01 |
0.01 |
0.01 |
| Unknown (MurSatRep) |
5.97 |
0.54 |
0.05 |
| Total | 58.2 | 61.2 | 42.2 |