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. 2013 Jun 14;29(16):1963–1969. doi: 10.1093/bioinformatics/btt339

Table 2.

Percentage of correct SAS- and MAS-signal identification with AdvISER-PYRO according to Inline graphic and Inline graphicnorm penalties and the Significant Contribution Threshold

Significant contribution threshold Inline graphicnorm SAS (n = 103)
 MAS (n = 122)
Inline graphicnorm
 Inline graphicnorm
0.00 0.01 0.05 0.10 0.50 0.00 0.01 0.05 0.10 0.50
1 0.00 / 90.3 84.5 82.5 68.9 / 62.3 58.2 52.5 29.5
0.01 89.3 89.3 84.5 82.5 68.9 65.6 62.3 59.0 52.5 29.5
0.05 89.3 90.3 84.5 82.5 68.9 67.2 62.3 59.0 52.5 29.5
0.10 89.3 90.3 84.5 82.5 68.9 66.4 61.5 59.0 52.5 29.5
0.50 89.3 90.3 84.5 82.5 68.9 65.6 63.1 59.0 51.6 29.5
2 0.00 / 94.2 93.2 91.3 83.5 / 77.0 75.4 73.0 59.0
0.01 94.2 94.2 93.2 91.3 83.5 77.9 77.0 74.6 73.0 59.0
0.05 94.2 94.2 93.2 91.3 83.5 77.9 77.0 73.8 73.0 59.0
0.10 94.2 94.2 93.2 91.3 83.5 77.9 77.0 74.6 73.0 59.0
0.50 94.2 94.2 93.2 91.3 83.5 77.0 77.9 75.4 71.3 59.0
3 0.00 / 95.1 95.1 94.2 90.3 / 66.4 66.4 65.6 59.0
0.01 95.1 95.1 95.1 94.2 90.3 66.4 66.4 65.6 65.6 59.0
0.05 95.1 95.1 95.1 94.2 90.3 66.4 66.4 66.4 65.6 59.0
0.10 95.1 95.1 95.1 94.2 90.3 66.4 66.4 66.4 65.6 59.0
0.50 95.1 95.1 95.1 94.2 90.3 67.2 65.6 65.6 64.8 58.2