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. 2012 Dec 5;21(8):876–882. doi: 10.1038/ejhg.2012.263

Table 2. Comparison of interesting regions of linkage meta-analysis with the personality GWAS meta-analysis.

Trait Bin Cyto SRP-value ORP-value PHET Approx. region (mbp) SNP GWAS (N>17000) β Effect allele MAF Effective no. of SNPs in the regiona P-value (nominal) Bonferroni thresholdb Candidate gene Distance of the SNP to the candidate gene (kb)c
Extraversion 9.6 9q34 0.003 0.049 0.036 125–150 rs11103814 −0.35 A 0.33 2049 1.3 × 1−05 4.2 × 1−06 OLFM1, KIAA0649 204.8, 153.8
  10.4 10q24 0.017 0.042 0.063 75–100 rs7922066 −0.44 A 0.18 2986 4.2 × 1−06 2.1 × 1−06 CRTAC1 Intron(NM_001206528.1)
  10.5 10q24 0.018 0.015 0.042 100–125 rs7905091 0.47 T 0.13 3073 2.5 × 1−05 2.1 × 1−06 LOXL4, PYROXD2 18.1, 97.2
  11.5 11q22 0.005 0.024 0.073 100–125 rs12419614 1.65 A 0.03 3177 1.1 × 1−04 2.0 × 1−06 GRIA4 Intron(NM_000829.3)
Openness 2.1 2p25 0.067 0.016 0.186 0–25 rs11685318 −0.38 A 0.20 3056 1.0 × 1−05 1.8 × 1−06 PDIA6, KCNF1 40.4, 58.7
  9.1 9p21 0.045 0.011 0.053 0–25 rs10966354 −0.30 T 0.37 3865 3.1 × 1−05 1.4 × 1−06 ELAVL2, TUSC1 810.7, 1039.6
  11.6 11q24 0.034 0.043 0.625 125–150 rs677035 −0.56 T 0.08 1393 2.6 × 1−06 4.4 × 1−06 FLI1, KCNJ1 13.9, 10.9
  15.4 15q26 0.045 0.031 0.280 75–100 rs8034376 −0.47 T 0.11 3135 2.0 × 1−04 2.0 × 1−06 FAM169B, IGF1R 6.5, 128.6
  19.3 19q13 0.048 0.007 0.165 50–75 rs2287826 −0.62 A 0.07 2106 1.2 × 1−04 4.8 × 1−06 LILRA4, LAIR1 12.8, 1.9
Agreeableness 4.8 4q34 0.003 0.048 0.008 175–200 rs13113475 0.28 A 0.20 1959 4.8 × 1−05 3.1 × 1−06 SPCS3, VEGFC 228.8, 122.5
  19.1 19p13 0.011 0.042 0.134 0–25 rs10413538 0.49 T 0.28 3209 3.7 × 1−04 3.6 × 1−06 ZNF826 Utr-5(NM_001039884.1)

P-values from GWAS significant after Bonferroni correction in bold italics.

a

Effective number of SNPs from the GWAS present in the bin.

b

Bonferroni threshold based on the total number of SNPs (both genotyped and imputed) from the GWAS present in the bin.

c

Positions are taken from dbSNP (http://www.ncbi.nlm.nih.gov/snp) and SCAN (http://www.scandb.org/newinterface/about.html) databases.