Table 2. Comparison of interesting regions of linkage meta-analysis with the personality GWAS meta-analysis.
Trait | Bin | Cyto | SRP-value | ORP-value | PHET | Approx. region (mbp) | SNP GWAS (N>17 000) | β | Effect allele | MAF | Effective no. of SNPs in the regiona | P-value (nominal) | Bonferroni thresholdb | Candidate gene | Distance of the SNP to the candidate gene (kb)c |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Extraversion | 9.6 | 9q34 | 0.003 | 0.049 | 0.036 | 125–150 | rs11103814 | −0.35 | A | 0.33 | 2049 | 1.3 × 1−05 | 4.2 × 1−06 | OLFM1, KIAA0649 | 204.8, 153.8 |
10.4 | 10q24 | 0.017 | 0.042 | 0.063 | 75–100 | rs7922066 | −0.44 | A | 0.18 | 2986 | 4.2 × 1−06 | 2.1 × 1−06 | CRTAC1 | Intron(NM_001206528.1) | |
10.5 | 10q24 | 0.018 | 0.015 | 0.042 | 100–125 | rs7905091 | 0.47 | T | 0.13 | 3073 | 2.5 × 1−05 | 2.1 × 1−06 | LOXL4, PYROXD2 | 18.1, 97.2 | |
11.5 | 11q22 | 0.005 | 0.024 | 0.073 | 100–125 | rs12419614 | 1.65 | A | 0.03 | 3177 | 1.1 × 1−04 | 2.0 × 1−06 | GRIA4 | Intron(NM_000829.3) | |
Openness | 2.1 | 2p25 | 0.067 | 0.016 | 0.186 | 0–25 | rs11685318 | −0.38 | A | 0.20 | 3056 | 1.0 × 1−05 | 1.8 × 1−06 | PDIA6, KCNF1 | 40.4, 58.7 |
9.1 | 9p21 | 0.045 | 0.011 | 0.053 | 0–25 | rs10966354 | −0.30 | T | 0.37 | 3865 | 3.1 × 1−05 | 1.4 × 1−06 | ELAVL2, TUSC1 | 810.7, 1039.6 | |
11.6 | 11q24 | 0.034 | 0.043 | 0.625 | 125–150 | rs677035 | −0.56 | T | 0.08 | 1393 | 2.6 × 1−06 | 4.4 × 1−06 | FLI1, KCNJ1 | 13.9, 10.9 | |
15.4 | 15q26 | 0.045 | 0.031 | 0.280 | 75–100 | rs8034376 | −0.47 | T | 0.11 | 3135 | 2.0 × 1−04 | 2.0 × 1−06 | FAM169B, IGF1R | 6.5, 128.6 | |
19.3 | 19q13 | 0.048 | 0.007 | 0.165 | 50–75 | rs2287826 | −0.62 | A | 0.07 | 2106 | 1.2 × 1−04 | 4.8 × 1−06 | LILRA4, LAIR1 | 12.8, 1.9 | |
Agreeableness | 4.8 | 4q34 | 0.003 | 0.048 | 0.008 | 175–200 | rs13113475 | 0.28 | A | 0.20 | 1959 | 4.8 × 1−05 | 3.1 × 1−06 | SPCS3, VEGFC | 228.8, 122.5 |
19.1 | 19p13 | 0.011 | 0.042 | 0.134 | 0–25 | rs10413538 | 0.49 | T | 0.28 | 3209 | 3.7 × 1−04 | 3.6 × 1−06 | ZNF826 | Utr-5(NM_001039884.1) |
P-values from GWAS significant after Bonferroni correction in bold italics.
Effective number of SNPs from the GWAS present in the bin.
Bonferroni threshold based on the total number of SNPs (both genotyped and imputed) from the GWAS present in the bin.
Positions are taken from dbSNP (http://www.ncbi.nlm.nih.gov/snp) and SCAN (http://www.scandb.org/newinterface/about.html) databases.