Table 1.
H. influenzae strains used in design of CGH array
| Strain name | # of Clusters | # of Coding sequences | Genome size (mb) | GC Content(%) | Clinical origin | Geographic origin | GenBank BioProject numbers | Reference |
|---|---|---|---|---|---|---|---|---|
| 22.1-21 |
1967 |
2220 |
1.89 |
38.03 |
Nasopharynx |
Ann Arbor, MI |
PRJNA54389 |
[32] |
| 22.4-21 |
1957 |
1975 |
1.85 |
38.04 |
Nasopharynx |
Ann Arbor, MI |
PRJNA16396 |
[32] |
| 22.1-24 |
1973 |
1915 |
2.1 |
37.91 |
Nasopharynx |
Ann Arbor, MI |
PRJNA29373 |
[32] |
| 3655 |
1991 |
1951 |
1.88 |
38.02 |
Blood |
San Diego, CA |
PRJNA54385 |
[33] |
| 6P18H1 |
2015 |
1952 |
1.91 |
38.1 |
COPD |
Buffalo, NY |
PRJNA55127 |
[34,35] |
| 7P49H1 |
1897 |
1801 |
1.83 |
37.85 |
COPD |
Buffalo, NY |
PRJNA55129 |
[34,35] |
| PITT AA |
2003 |
1973 |
1.88 |
38.12 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA54391 |
[36] |
| PITT BB |
1922 |
1892 |
1.83 |
37.99 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA16402 |
CGS |
| PITT CC |
1915 |
1892 |
1.82 |
37.98 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA18099 |
CGS |
| PITT DD |
1865 |
2900 |
1.78 |
37.89 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA16392 |
CGS |
| PITT EE |
1848 |
1870 |
1.81 |
38.04 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA58591 |
[36] |
| PITT GG |
1966 |
2097 |
1.89 |
38.01 |
AOM, ottorhea |
Children's Hospital, Pittsburgh, PA |
PRJNA58593 |
[36] |
| PITT HH |
1948 |
1968 |
1.84 |
38.00 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA54393 |
[36] |
| PITT II |
2057 |
2038 |
1.95 |
38.01 |
AOM, ottorhea |
Children's Hospital, Pittsburgh, PA |
PRJNA54395 |
[36] |
| PITT JJ |
2054 |
2293 |
1.97 |
38.03 |
COME, tube replacement |
Children's Hospital, Pittsburgh, PA |
PRJNA18103 |
CGS |
| NML20 |
1838 |
1757 |
1.78 |
37.91 |
Blood |
Manitoba, Canada |
PRJNA29375 |
CGS |
| R1838 |
1900 |
1813 |
1.82 |
38.01 |
Blood |
Papua New Guinea |
PRJNA29377 |
CGS |
| R3021 |
2017 |
1977 |
1.88 |
37.96 |
Nasopharynx |
Seattle, WA |
PRJNA54397 |
[29] |
| R393 |
2109 |
2175 |
2 |
38.15 |
Sputum isolate |
Malaysia |
PRJNA29379 |
CGS |
| 86-028NP |
2001 |
1925 |
1.91 |
38.15 |
Nasopharynx |
Nationwide Childrens Hospital, Columbus, OH |
PRJNA58093 |
[30] |
|
B10810 |
2044 |
2007 |
1.98 |
38.1 |
Meningitis |
United Kingdom |
PRJNA86647 |
Sanger |
| R2846 |
1856 |
1803 |
1.82 |
38.02 |
OME |
Seattle, WA |
PRJNA191921 |
[29] |
| R2866 |
2017 |
1929 |
1.93 |
38.08 |
Blood |
Seattle, WA |
PRJNA161923 |
[29] |
| RD KW20 |
1892 |
1874 |
1.83 |
38.15 |
Laboratory Strain |
Columbia University |
PRJNA57771 |
[28] |
| Avg | 1960.5 | 1999.875 | 1.8825 | 38.02 | n/a | n/a | n/a | n/a |