Table 3.
Gene clustering and probe design
| # Sequences | # Clusters | # Clusters with probes | # Subclusters | # Subclusters with probes | # Individual probes | # Probes (account duplication) | |
|---|---|---|---|---|---|---|---|
| Distributed Set |
9813 |
1562 |
1465 |
2186 |
2008 |
25267 |
50534 |
| Core Set |
38184 |
1538 |
1425 |
2350 |
2044 |
6040 |
12080 |
|
All Clusters |
47997 |
3100 |
2890 |
4536 |
4052 |
31307 |
62614 |
| Negative Controls |
185 |
n/a |
n/a |
n/a |
n/a |
185 |
370 |
| Nimblegen Controls |
n/a |
n/a |
n/a |
n/a |
n/a |
9053 |
9053 |
| Total | 48182 | 3100 | 2890 | 4536 | 4052 | 40545 | 72037 |