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. 2013 Jul 26;8(7):e70982. doi: 10.1371/journal.pone.0070982

Table 1. Primers for genome cloning and mutagenesis of IBDV.a .

Name Sequence Orientation Position (nt)
GxAA854GU AGTCTCAGCgTCGGGGGAGA sense A: 845∼864
GxAA854GL TCTCCCCCGAcGCTGAGACT antisense A: 845–864
GxAA876GU TCGTGTTTCgAACAAGCGTC sense A: 867∼886
GxAA876GL GACGCTTGTTcGAAACACGA antisense A: 867∼886
GxA889896U TCCATGGCCTTgTACTGGGTGC sense A: 885∼906
GxA889896L GCACCCAGTAcAAGGCCATGGA antisense A: 885∼906
GxAG938AU TGATGGGACTaCGGTAATCACC sense A: 928∼949
GxAG938AL GGTGATTACCGtAGTCCCATCA antisense A: 928∼949
GxA965980U TGTGGCCGCAaACAATGGGCTAACGACCGGCACTGA sense A: 955∼990
GxA965980L TCAGTGCCGGTCGTTAGCCCATTGTtTGCGGCCACA antisense A: 955∼990
GtAG876AU TCGTGTTTCgAACAAGCGTC sense A: 867∼886
GtAG876AL GACGCTTGTTcGAAACACGA antisense A: 867∼886
GtAG896AU TCCAAGGCCTTgTACTGGGTGC sense A: 885∼906
GtAG896AL GCACCCAGTAcAAGGCCTTGGA antisense A: 885∼906
GxAU GGAATTCGGATACGATCGGTCTGAC sense A: 1∼18
GxA1477L AGGTAGCCCATGTCTGGT antisense A: 1460∼1477
B3P ACTACCCACTCCTGAACAAA sense B:2009∼2028
B37 GCTCTAGAGGGGGCCCCCGCAGGCGAAGGCCGGGGAT antisense B: 2799∼2827
a

The positions where the primers GtAG876AU, GtAG876AL, GtAG896AU, and GtAG896AL bind are in accordance with the published sequence of IBDV strain Gt (GenBank assession nos: DQ403248). The positions where other primers bind are in accordance with the published sequence of strain Gx (GenBank assession nos: AY444873 and AY705393). The introduced mutations are lower-case characters. Orientation and position of the primers are shown.