Table 1. Summary of features used for classification by RFMirTarget.
Feature Name | Top 12 | Feature Name | Top 12 | ||
1 | Alignment score | * | 18 | Position 10 | |
2 | Alignment length | 19 | Position 11 | ||
3 | Minimum free energy of the alignment | * | 20 | Position 12 | |
4 | G:C’s absolute frequency in the alignment | * | 21 | Position 13 | |
5 | A:U’s absolute frequency in the alignment | * | 22 | Position 14 | |
6 | G:U’s absolute frequency in the alignment | 23 | Position 15 | ||
7 | Number of gaps in the alignment | 24 | Position 16 | ||
8 | Number of mismatches in the alignment | 25 | Position 17 | ||
9 | Position 1 | 26 | Position 18 | ||
10 | Position 2 | * | 27 | Position 19 | |
11 | Position 3 | 28 | Position 20 | ||
12 | Position 4 | * | 29 | Minimum free energy of the seed | * |
13 | Position 5 | 30 | G:C’s absolute frequency in the seed | * | |
14 | Position 6 | * | 31 | A:U’s absolute frequency in the seed | * |
15 | Position 7 | * | 32 | G:U’s absolute frequency in the seed | * |
16 | Position 8 | 33 | Number of gaps in the seed | ||
17 | Position 9 | 34 | Number of mismatches in the seed |
The top 12 features refer to those features with greatest impact in the predictive accuracy of the RF model, estimated by means of a restricted forward feature selection.