Table 2.
Summary of 29 SNPs used in this study
| dbSNP ID | Chr. | SNP type | Nearest gene | Genotype frequency |
|---|---|---|---|---|
| rs547984 | 1 | intergenic | ZP4 | AA(0.263) AC(0.488) CC(0.249) |
| rs1892116 | 1 | intronic | AHCTF1 | AA(0.507) AG(0.445) GG(0.048) |
| rs4666488 | 2 | intergenic | OSR1 | AA(0.100) AG(0.397) GG(0.503) |
| rs2268794 | 2 | intronic | SRD5A2 | AA(0.005) AT(0.319) TT(0.676) |
| rs7574012 | 2 | intergenic | QPCT | AA(0.373) AG(0.459) GG(0.168) |
| rs1990702 | 2 | intergenic | LRP2 | GG(0.120) GA(0.433) AA(0.447) |
| rs10930437 | 2 | intergenic | SP5 | AA(0.429) AG(0.454) GG(0.117) |
| rs779701 | 3 | intronic | GRM7 | AA(0.490) AG(0.413) GG(0.097) |
| rs6550783 | 3 | intergenic | UBE2E1 | AA(0.412) AG(0.442) GG(0.146) |
| rs6550308 | 3 | intergenic | ARPP21 | GG(0.215) GA(0.488) AA(0.297) |
| rs3922704 | 3 | intronic | PLCXD2 | CC(0.034) CG(0.254) GG(0.712) |
| rs17279573 | 4 | intergenic | KIAA0922 | GG(0.120) GA(0.483) AA(0.397) |
| rs818725 | 5 | intronic | ADAMTS12 | CC(0.019) CG(0.226) GG(0.755) |
| rs11750584 | 5 | intergenic | HEATR7B2 | CC(0.029) CG(0.292) GG(0.679) |
| rs9640055 | 7 | intronic | GLCCI1 | GG(0.038) GA(0.344) AA(0.618) |
| rs2966712 | 7 | intergenic | LOC285965 | AA(0.005) AG(0.211) GG(0.784) |
| rs411102 | 9 | intergenic | KRT8P11 | GG(0.749) GA(0.242) AA(0.009) |
| rs7850541 | 9 | intergenic | GBGT1 | GG(0.514) GA(0.361) AA(0.125) |
| rs7081455 | 10 | intergenic | PLXDC2 | AA(0.644) AC(0.293) CC(0.063) |
| rs493622 | 11 | intergenic | CHORDC1 | AA(0.565) AC(0.383) CC(0.052) |
| rs610160 | 11 | intronic | GRIA4 | AA(0.693) AG(0.262) GG(0.045) |
| rs7961953 | 12 | intronic | TMTC2 | GG(0.522) GA(0.397) AA(0.081) |
| rs10492680 | 13 | intergenic | FLJ42392 | GG(0.005) GA(0.187) AA(0.808) |
| rs1571379 | 14 | intergenic | SEL1L | AA(0.440) AG(0.454) GG(0.106) |
| rs9788983 | 17 | intronic | RPH3AL | AA(0.770) AG(0.215) GG(0.015) |
| rs16940484 | 18 | intronic | TTC39C | GG(0.469) GA(0.450) AA(0.081) |
| rs2864107 | 19 | intergenic | ZNF175 | GG(0.684) GA(0.301) AA(0.015) |
| rs6115865 | 20 | intergenic | C20orf194 | AA(0.125) AG(0.428) GG(0.447) |
| rs5765558 | 22 | intergenic | ATXN10 | AA(0.287) AG(0.478) GG(0.235) |
The dbSNP ID represents with build 130. Chr. denotes the number of chromosome. The Nearest genes are positioned nearest by each SNP and referred to NCBI Build 36. Genotype frequencies are calculated by total samples used in this study, which are 115 POAG patients and 94 healthy control volunteers.