Table 1.
Integrase genes identified in specific pneumococcal genetic elements, grouped by nucleotide sequence similarity
| Group |
Integrase |
Genetic elementa |
Genbank |
|---|---|---|---|
| gene type | representativea | accession no. | |
| 1 |
intTn916 |
Tn1311(a) |
FN667862.2 |
| |
|
Tn1545 |
X61025.1 |
| |
|
Tn2010 |
AB426620.1 |
| |
|
Tn5251 |
FJ711160.1 |
| |
|
Tn5253(a) |
EU351020.1 |
| |
|
Tn6003 |
AM410044.5 |
| |
|
ICESpn11876(a) |
FR671404.1 |
| |
|
ICESpn11930(a) |
FR671403.1 |
| 2 |
intICESp23FST81 |
ICESpn11876(b) |
FR671404.1 |
| |
|
ICESpn6094 |
FR670347.2 |
| 3 |
intICESpn8140 |
ICESpn8140 |
FR671412.1 |
| 4 |
intTn5252 |
Tn1131(b) |
FN667862.2 |
| |
|
Tn5253(b) |
EU351020.1 |
| ICESpn11930(b) | FR671403.1 |
a. (a) and (b) refer to pairs of different integrase genes found in elements Tn1131, Tn5253, ICESpn11876 and ICESpn11930. Other representatives of genetic elements in these groups may be found in the ICEberg database (http://db-mml.sjtu.edu.cn/ICEberg/).