Table 2.
Pneumococcal isolates included in this study
| Isolate | Serotype | Year | Country | ST | CC | Genome accession no.b |
|---|---|---|---|---|---|---|
| 7A/2 |
7A |
1937 |
Denmark |
191 |
191 |
ERR025824 |
| 14/3 |
14 |
1939 |
Denmark |
875 |
1106 |
ERR026719 |
| 17 F/2 |
17 F |
1939 |
Denmark |
123 |
113 |
ERR026724 |
| 18C/2 |
18C |
1939 |
Denmark |
4706 |
113 |
ERR026186 |
| 22A/2 |
22A |
1939 |
Denmark |
7181 |
490 |
ERR025822 |
| 18B/2 |
18B |
1941 |
Denmark |
4706 |
113 |
ERR026193 |
| 35C/2 |
35C |
1941 |
Denmark |
7196 |
113 |
ERR026192 |
| 2/3 |
2 |
1943 |
Denmark |
3744 |
490 |
ERR026715 |
| 35C/3 |
35C |
1943 |
Denmark |
5989 |
113 |
ERR025823 |
| 23A/2 |
23A |
1945 |
Denmark |
439 |
439 |
ERR025821 |
| 7B/2 |
7B |
1952 |
USA |
7180 |
66 |
ERR025825 |
| 7 F/2 |
7 F |
1952 |
USA |
7210 |
218 |
ERR026172 |
| 9 L/2 |
9 L |
1952 |
USA |
5979 |
124 |
ERR026178 |
| 9 N/2 |
9 N |
1952 |
USA |
7205 |
None3782 |
ERR026179 |
| 14/2 |
14 |
1952 |
USA |
124 |
124 |
ERR025830 |
| 17 F/1 |
17 F |
1952 |
USA |
574 |
574 |
ERR025831 |
| 19 F/8 |
19 F |
1952 |
Denmark |
7229 |
4399 |
ERR026190 |
| 2/2 |
2 |
1956 |
USA |
574 |
574 |
ERR025820 |
| 10 F/2 |
10 F |
1956 |
USA |
7186 |
490 |
ERR025828 |
| 11C/1 |
11C |
1957 |
USA |
7201 |
124 |
ERR025829 |
| 9 N/6 |
9 N |
1960 |
Denmark |
71 |
66 |
ERR026180 |
| 12 F/3 |
12 F |
1961 |
Denmark |
7228 |
4399 |
ERR026195 |
| 14/4 |
14 |
1961 |
Denmark |
134 |
124 |
ERR026188 |
| 18 F/1 |
18 F |
1961 |
USA |
7182 |
490 |
ERR026173 |
| 7 F/3 |
7 F |
1962 |
Denmark |
191 |
191 |
ERR026176 |
| 9A/1 |
9A |
1962 |
USA |
312 |
156/162 |
ERR025826 |
| 12 F/2 |
12 F |
1962 |
USA |
7194 |
Singleton7194 |
ERR026183 |
| 17 F/3 |
17 F |
1962 |
Denmark |
392 |
392 |
ERR026725 |
| 17 F/4 |
17 F |
1962 |
Denmark |
392 |
392 |
ERR026726 |
| 19 F/5 |
19 F |
1962 |
Denmark |
7229 |
4399 |
ERR026717 |
| 19 F/10 |
19 F |
1963 |
Denmark |
7230 |
Singleton7230 |
ERR026174 |
| 14/5a |
14 |
1967 |
Denmark |
15 |
15 |
ERR026720 |
| 23 F/4 |
23 F |
1967 |
Australia |
7184 |
Singleton7184 |
ERR026191 |
| 9 V/4 |
9 V |
1968 |
Denmark |
123 |
113 |
ERR025827 |
| 18C/3a |
18C |
1968 |
Denmark |
7195 |
113 |
ERR026716 |
| PN2 |
4 |
1969 |
PNG |
7152 |
Singleton7152 |
ERR163219 |
| 19 F/11 |
19 F |
1972 |
Denmark |
71 |
66 |
ERR026175 |
| PN1a | 6 | 1972 | PNG | 7151 | 277 | ERR163220 |
Note: PNG = Papua New Guinea; ST = Sequence Type; CC = Clonal Complex.
a. Isolates that possess the mobile elements discussed in this manuscript and are depicted in Figure 1.
b. European Nucleotide Archive accession number.