Table 2. Relevant calculated populations and maximal contact lifetimes between linker and TI loop residues.
Model | K252–X400 | K252–X402 | R253–X400 | R253–X402 | Y255–X400 | Y255–F401 |
States (bound – unbound) | ||||||
WT | 49–451 | 202–298 | 497–3 | 431–69 | 0–500 | 460–40 |
NEUT | 0–500 | 0–500 | 0–500 | 6–494 | 285–215 | 460–40 |
ALA | 27–473 | 81–419 | 454–46 | 8–492 | 497–3 | 478–22 |
D400A | 4–496 | 78–422 | 480–20 | 488–12 | 285–215 | 441–59 |
Maximal contact lifetime (ns) | ||||||
WT | 0.6 | 1.9 | 24.3 | 16.6 | – | 6.9 |
NEUT | – | – | – | 0.2 | 4.1 | 13.8 |
ALA | 1.0 | 4.3 | 8.9 | 0.3 | 24.5 | 12.4 |
D400A | 0.1 | 2.0 | 17.3 | 21.9 | 7.7 | 7.5 |
Relation of connected and broken states (population) and maximal contact lifetimes for each interaction during the whole simulation of 50 ns are listed. For determining the population, the existence of a contact was checked in 100-ps-steps. Thus, the total number of possible states is 500. For the contact definition, a cut-off sphere of 3.5 Å is used. Beyond this value, a contact is defined as broken.