Table 1.
Alternative splicing of genes expressed in retina
| Gene symbol | Gene name | Isoforms | nt accession #/reference | Chicken isoforms |
|---|---|---|---|---|
| AGRN | Agrin | agrin 0 (B0) | NM_198576 | NM_205527 |
| agrin 8 (B8) | Rupp et al., 1992 | Ruegg et al., 1992 | ||
| agrin 11 (B11) | Rupp et al., 1992 | Ruegg et al., 1992 | ||
| agrin 19 (B19) | Rupp et al., 1992 | U07271 | ||
| ARB1/ARRB1 | arrestin beta 1 | ARRB 1a | NM_177231 | EST |
| ARRB 1b | NM_178220 | Not found | ||
| DAB1 | Disabled-1 | DAB1-L | NM_021080 | AY242123 |
| DAB1-E | Unpublished | AY242122 | ||
| FOXN3 | Forkhead box protein N3 | FOXN3-alpha | AM114794 | Not found |
| FOXN3-beta | AM114795 | EST | ||
| GABRB2 | gamma-aminobutyric acid A receptor beta 2 | GABAAβ2S | NM_000813 | Harvey et al., 1994 |
| GABAAβ2L | NM_021911 | Harvey et al., 1994 | ||
| GABRG2 | gamma-aminobutyric acid A receptor gamma 2 | GABAAγ2S | NM_000816 | Glencorse et al., 1992 |
| GABAAγ2L | NM_198904 | NM_205345 | ||
| GABBR1 | gamma-aminobutyric acid B receptor 1 | GABAB1a | NM_001470 | EST |
| GABAB1b | NM_021903 | Not found | ||
| GABAB1c | NM_021904 | Not found | ||
| GABAB1d | NM_021905 | Not found | ||
| GABAB1e | Billinton et al., 2001 | Not found | ||
| GLT1/SLC1A2 | glutamate transporter 1 | GLT1a | NM_004171 | EST |
| GLT1b/v | Schmitt et al., 2002 | NM_001012899 | ||
| GLT1c | Rauen et al., 2004 | Not found | ||
| GRK1 | G-protein receptor kinase 1 (rhodopsin kinase) | GRK1a | NM_002929 | NM_204695 |
| GRK1b | Zhao et al., 1998 | Not found | ||
| MAF | musculoaponeurotic fibrosarcoma oncogene | c-Maf-alpha | NM_005360 | D28596 |
| c-Maf-beta | NM_001031804 | D28596 | ||
| GRM1 | metabotropic glutamate receptor 1 | mGluR1a | NM_000838 | EST |
| mGluR1b | HSU31216/gi:945098 | EST | ||
| mGluR1c | Pin et al., 1992 | Not found | ||
| mGluR1d | Laurie et al., 1996 | Not found | ||
| mGluR1g | Makoff et al., 1997 | Not found | ||
| NETO1 | neuropilin- and tolloid-like protein 1 | NETO1 isoform 1 | NM_138999 | Not found |
| NETO1 isoform 2 | NM_153181 | XM_414109 | ||
| NETO1 isoform 3 | NM_138966 | XM_419104 | ||
| NMDAR1/ GR1N1/NR1 | NMDA receptor 1/ glutamate receptor, ionotropic, N-methyl D-aspartate 1/Nuclear factor 1 | NMDAR1a | NM_000832 | EST |
| NMDAR1b | NM_021569 | NM_206979 | ||
| NMDAR1c | NM_007327 | AAY663373 | ||
| NR2E3 | Nuclear receptor subfamily 2, group E, member 3 | NR2E3-alpha | NM_016346 | Not found |
| NR2E3-beta | NM_014249 | NM_204594 | ||
| NRL | Neural retina leucine zipper | Nrl | NM_006177 | Not found |
| Nrl-ins | Wistow et al., 2002 | Not found | ||
| NUMB | numb homologue | numb isoform 1 | NM_001005743 | Not found |
| numb isoform 2 | NM_001005744 | AF176086 | ||
| numb isoform 3 | NM_003744 | AF213691 | ||
| numb isoform 4 | NM_001005745 | Not found | ||
| OTX2 | orthodenticle homolog 2 | OTX2A | NM_021728 | NM_204520 |
| OTX2B | NM_172337 | EST | ||
| PAX6 | Paired box gene 6 | PAX6-alpha | NM_000280 | Not found |
| PAX6-beta | NM_001604 | NM_205066 | ||
| PDE6G | phosphodiesterase-6 gamma | PDE6G | NM_002602 | NM_204445 |
| PDE6G (–ex2) | Wistow et al., 2002 | Not found | ||
| RPGR | retinitis pigmentosa GTPase regulator | RPGRa | NM_00328 | EST |
| RPGRb | NM_001023582 | Not found | ||
| RPGRc | NM_001034853 | XM_416780 | ||
| RELN | Reelin | RELNa | NM_005045 | XM_425424 |
| RELNb | NM_173054 | EST | ||
| SIX3 | sine oculis homeobox homolog 3 | SIX3-alpha | Kawakami et al., 1996 | Not found |
| SlX3-beta | NM_005413 | AY373324 | ||
| VEGF | vascular endothelial growth factor | VEGF165a | NM_001025368 | AY168004 |
| VEGF206a | NM_001025366 | NM_205042 | ||
| VEGF165b | NM_001033756 | Not found | ||
| VSX1 | visual system homeobox 1 | VSX1A | NM_014588 | NM_204769 |
| VSX1B | NM_199425 | Not found | ||
| WT1 | Wilms tumor 1 | WT1-beta(−KTS) | NM_024424 | EST |
| WT1-delta(+KTS) | NM_024426 | NM_205216 |