Table 2.
Alternative splicing of genes expressed in chicken brain and other tissues
| Gene symbol | Gene name | Isoforms | nt accession # (human)/reference | Chicken isoforms |
|---|---|---|---|---|
| CSNK1A1 | casein kinase I | CKIalpha | NM_001025105 | NM_205053 |
| CKIalphaL | Yong et al., 2000 | Green and Bennett, 1998 | ||
| CKIalphaS | Yong et al., 2000 | Green and Bennett, 1998 | ||
| CKIalphaLS (chicken only) | Green and Bennett, 1998 | |||
| DBN1 | drebrin | Drebrin E2 | NM_004395 | NM 205499, Kojima et al., 1993 |
| Drebrin El (chicken only) | Toda et al., 1993 | |||
| DrebrinA | NM_080881 | Kojima et al., 1993 | ||
| FGFR2 | fibroblast growth factor receptor 2 | FGFR2IIIb/K-SAM | NM_022970 | Sato et al., 1992 |
| FGFR2IIIc/BEK | NM_000141 | NM_205319, Sato et al., 1991 | ||
| GRIA4 | ionotropic glutamate receptor 4/AMPA4 | GluR4a | NM_000829 | NM_205214 |
| GluR4c | Kawahara et al., 2004 | U65992 | ||
| GluR4d (chicken only) | U65993 | |||
| GluR4s (chicken only) | U65991 | |||
| IL1RL1/ST2 | interleukin 1 receptor-like 1 | ST2 | D12763 | AB041737 |
| ST2L | AB012701 | AB041738 | ||
| ST2V | AB029084 | Not found | ||
| ST2LV (chicken only) | AB041739 | |||
| MAPK9 | c-Jun N-terminal kinase 2 | JNK2-alpha1 | NM_139068 | NM_205095 |
| JNK2-alpha2 | NM_002752 | Not found | ||
| JNK2-beta1 | NM_139069 | Not found | ||
| JNK2-beta2 | NM_139070 | Not found | ||
| MAPT | microtubule-associated protein tau | MAPT variant 1 | NM_016835 | Yoshida and Goedert, 2002 |
| MAPT variant 2 | NM_005910 | Yoshida and Goedert, 2002 | ||
| MAPT variant 3 | NM_016834 | Yoshida and Goedert, 2002 | ||
| MAPT variant 4 | NM_016841 | Yoshida and Goedert, 2002 | ||
| MYB | c-myb | c-myb+9a | Dasgupta and Reddy, 1989 | Schuur et al., 1993 |
| c-myb (−9a) | NM_005375 | NM_205306 | ||
| NFASC | neurofascin | NFASC variant 1 | NM_001005388 | XM_417958 |
| NFASC variant 2 | NM_015090 | Hassel et al., 1997 | ||
| NFASC variant 3 | NM_001005389 | Hassel et al, 1997 | ||
| NGF | nerve growth factor | Multiple | multiple | |
| PDE5A | cGMP-binding, cGMP-specific 3′, 5′-cyclic nucleotide phosphodiesterase | PDE5A variant 1 | NM_001083 | Giordano et al., 2004 |
| PDE5A variant 2 | NM_033430 | Giordano et al., 2004 | ||
| PDE5A variant 3 | NM_033437 | Giordano et al., 2004 | ||
| PSAP | prosaposin | hPSAP0 | NM_002778 | Cohen et al., 2004 |
| hPSAP9 | NM_001042465 | Cohen et al., 2004 | ||
| hPSAP6 | NM_001042466 | Absent in chicken, Cohen et al., 2004 | ||
| SRC | Src | Src | NM_005417 | XM_425696 |
| neuronal Src-NI | Pyper and Bolen, 1990 | Martinez et al., 1987 | ||
| neuronal Src-NII | Pyper and Bolen, 1990 | Not found | ||
| SST | somatostatin | SS1/PSS1 | NM_001048 | NM_205336 |
| SS2/PSS2 | Trabucchi et al., 2003 | AY221945 | ||
| TERT | telomerase reverse transcriptase | multiple | multiple | |
| TPM2 | beta-tropomyosin | TPM2–6a | NM_213674 | Libri et al., 1991 |
| TPM2–6b | NM_003289 | Libri et al., 1991 |