Table 3. Distribution of sequence mismatches to array probe sets.

Gene/Sample	No. samples	Polym.*	Polym. **	Fixed differences
CG3610
+D	2	0	0	0
−D	2	0	0	0
Controls	2	0	0	0
All	6	0	0	0
CG3121
+D	2	4(1)	0	0
−D	2	0	0	0
Controls	2	4(1)	0	0
All	6	4(1)	0	0
CG11598
+D	1	0	0	1
−D	2	3(2)	1	0
Controls	2	0	0	0
All	5	3(2)	1	0
CG5509
+D	0	–	–	–
−D	2	0	0	0
Controls	2	0	0	0
All	4	0	0	0
CG32396
+D	2	1	1	0
−D	2	0	0	0
Controls	2	0	0	0
All	6	1	1	0
CG11414
+D	1	0	0	1
−D	2	0	0	1
Controls	2	0	0	2(1)
All	5	1(1)	1(1)	1
CG34015
+D	1	0	0	0
−D	1	0	0	0
Controls	2	0	0	0
All	4	0	0	0

The first column shows the gene and sample analyzed (+D: most depressed; −D: least depressed, All: +D, −D and controls). The next four columns indicate the number of samples, sites that are polymorphic using a relaxed criterion* (SNPs supported by one sequenced strand), sites that are polymorphic using a strict criterion** (SNPs supported by the two sequenced strands), and the number of fixed nucleotide differences to each microarray probe set. The number of non-synonymous changes out of the total is indicated in parenthesis.