Table 2. Percentage amino acid identity among all ungapped positions between pairs; predicted PRV proteins and the homologues proteins from three reovirus prototype strains.
PRV | PRV | PRV | PRV | PRV | PRV | PRV | PRV | PRV | PRV | |
λ3 | λ2 | λ1 | µ2 | µ1 | µNS | σ3 | σ2 | σNS | σ1 | |
MRV T3Da | 43 | 23 | 32 | 20 | 28 | 17 | 13 | 20 | 20 | 21d |
ARV-138b | 44 | 22 | 31 | 21 | 27 | 17 | 15 | 20 | 18 | 14 |
GCRV-873c | 38 | 25 | 31 | 21 | 24 | 13 | 15 | 17 | 13 | f- |
Ref. Table 1 for gene segment annotations and names of homologues proteins in MRV, ARV and GCRV. Identity values are from separate pairwise alignments of the protein sequences.
Value from a manually adjusted pairwise alignment of the two proteins.
GCRV does not appear to have a cell attachment protein homologue to σ1/σC.