Table 1. Genes significantly differentially expressed in shn1–1D plants 72 h post- inoculation with B. cinerea (FC >2; P<0.05).
| ATG | FC | Gene Description | ATG | FC | Gene Description | |
| Hormone signaling | Redox state | |||||
| Auxin | AT1G32350 | 62.7 | AOX1D (Alternative oxidase 1) | |||
| AT4G37390 | 18.3 | YDK1/YADOKARI1/GH32 encodes an IAA-amido synthas | AT2G29350 | 32.9 | SAG13 (SENESCENCE-ASSOCIATED GENE 13) | |
| AT3G25290 | 9.5 | auxin-responsive family protein | AT1G28480 | 13.5 | GRXC9 (glutaredoxin family protein ) | |
| AT1G28130 | 4.3 | GH3.17 encodes an IAA-amido synthase | AT1G03850 | 8.6 | GRXS13 (glutaredoxin family protein ) | |
| AT3G22850 | 3.6 | similar to auxin down-regulated protein ARG10 | AT3G28850 | 4.4 | glutaredoxin family protein | |
| AT5G13370 | 3.3 | auxin-responsive family protein | AT3G19010 | 3.6 | oxidoreductase,2OG-Fe(II) | |
| AT2G37980 | 3.2 | similar to Auxin induced axi 1 | AT1G45145 | 2.9 | ATTRX5 (Thioredoxin H-Type 5) | |
| Brasinosteroids | Peroxidases | |||||
| AT1G74360 | 17 | similar to BRL1(BRI1 LIKE) | AT5G05340 | 34.5 | PER52 (Peroxidase52 precursor) | |
| AT3G13380 | 7.1 | BRL3(BRI1-LIKE3) | AT3G49120 | 8.9 | PERX34(Peroxidase 34precursor) | |
| ABA | AT5G06720 | 7.5 | Identical to Peroxidase53 precursor (PER53) | |||
| AT1G02590 | 3.2 | aldehyde oxidase | AT4G36430 | 7.2 | PER49 (Peroxidase 49 precursor) | |
| AT4G26080 | 3.1 | ABI1 (ABA INSENSITIVE1) | AT5G19880 | 5.2 | PER 58 (Peroxidase 58 precursor) | |
| Ethylene | AT5G64100 | 3.8 | PER69 (Peroxidase 69 precursor) | |||
| AT1G01480 | 19 | ACS (ACC synthase gene family) | AT1G07890 | 3.8 | APX1/MEEA6 (ASCORBATE PEROXIDASE1) | |
| AT4G37150 | 16.7 | esterase | AT4G37530 | 3.4 | Identical to Peroxidase 51 precursor (PER51) | |
| AT3G50260 | 4.8 | AtERF11/CEJ1 (regulated by Ethylene and jasmonate) | Glutathion-S-transferases | |||
| Proteolysis | AT1G69930 | 53.1 | AtGSTU11(Glutathione S-transferase, class tau11) | |||
| AT3G50930 | 11.8 | AAA-type ATPase family protein | AT2G29470 | 30.7 | AtGSTU3 (GlutathioneS-transferase 21) | |
| AT5G67340 | 8.6 | armadillo/beta-catenin repeat family protein | AT2G29460 | 28.6 | AtGSTU4 (GlutathioneS-transferase 22) | |
| AT2G38860 | 7.6 | YLS5 (yellow-leaf-specific gene5) | AT1G17180 | 23.3 | AtGSTU25 (GlutathioneS-transferase, class tau 25) | |
| AT2G42360 | 6.5 | Zinc finger(C3HC4-type)family protein Identical to ATL2L | β-glucanase | |||
| AT1G44130 | 6.2 | nucellin protein, putative;aspartic-type endopeptidase | AT3G04010 | 3.9 | glycosyl hydrolase family 17protein | |
| AT5G63970 | 4.3 | similar to copine-related | PR proteins | |||
| AT5G45890 | 4.3 | SAG12(SENESCENCE-ASSOCIATEDGENE 12 | AT3G04320 | 14.1 | endo peptidase inhibitor | |
| AT5G41400 | 3.8 | Zinc finger(C3HC4-type )family protein | AT1G02360 | 8.2 | chitinase | |
| AT5G57480 | 3.4 | AAA-type ATPase family protein | AT3G23110 | 6.7 | disease resistance family protein | |
| AT1G08050 | 3.4 | Zinc finger(C3HC4-type)family protein | AT1G55210 | 6.1 | disease resistance response | |
| AT1G76390 | 3.1 | armadillo/beta-catenin repeat family protein | AT3G54420 | 5.7 | ATEP3 (chitinase class IV) | |
| AT2G45040 | 3.1 | matrix metallo-proteinase | AT1G22900 | 3.8 | disease resistance family protein | |
| AT1G71400 | 3.6 | disease resistance family protein/LRR family protein | ||||
| Cell wall | Secondary metabolism | |||||
| AT5G62150 | 22.9 | peptidoglycan-binding LysM domain-containing protein | ||||
| AT3G09410 | 19 | pectin acetyl esterase family protein | AT3G26830 | 67.6 | PAD3 (PHYTOALEXIN DEFICIENT 3)(CYP450 71B15) | |
| AT4G18990 | 6.5 | AtXTH29 (xyloglucosyl transferase) | AT4G37990 | 8.6 | ELI3–2(ELICITOR-ACTIVATED GENE3) | |
| Tabl1 cont. | ||||||
| Cell wall cont. | Secondary metabolism cont. | |||||
| AT1G67070 | 4.5 | DIN9 (DARK INDUCIBLE9) | AT2G37040 | 8.1 | PAL1(PHEAMMONIALYASE 1) | |
| Pathogen/pest attack signaling | AT1G51680 | 5.9 | 4CL1(4-COUMARATECOA LIGASE 1) | |||
| AT5G64905 | 52 | PROPEP3 (Elicitor peptide 3 precursor) | AT2G36800/AT2G36790 | 5.8 | UGT73C6(UDP-glucosyl transferase73C6) | |
| AT3G01830 | 23.9 | calmodulin-related protein, putative | AT5G49690 | 5.4 | UDP-glucosyl transferase family protein | |
| AT5G11210 | 18.3 | AtGLR2.5 (glutamate receptor 2.5) | AT3G51440 | 4.8 | strictosidine synthase family protein | |
| AT3G46280 | 12.1 | protein kinase-related | AT5G63600 | 4.6 | flavonol synthase, putative | |
| AT5G01550 | 10.9 | lectin protein kinase, putative | AT5G39050 | 4.6 | transferase family protein | |
| AT2G39200 | 9.6 | MLO12 (MILDEW RESISTANCE LOCUS O12) | AT3G50280 | 4.4 | transferase family protein | |
| AT3G09010 | 7.4 | Protein kinase family protein | AT2G18950 | 4.3 | HPT1(HOMO GENTISATEPHYTYL TRANSFERASE 1) | |
| AT5G25930 | 7.2 | leucine-rich repeat family protein/protein kinase family | AT5G48180 | 4.3 | NSP5 (nitrile-specifier protein) | |
| AT5G26920 | 6.9 | calmodulin binding protein | AT2G30490 | 3.8 | ATC4H (CINNAMATE–4-HYDROXYLASE) (CYP450 73A5) | |
| AT5G38250 | 6 | serine/threonine protein kinase, putative | AT4G34230 | 3.7 | CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) | |
| AT4G23140 | 5.9 | CRK6(CYSTEINE-RICH RLK6) | AT3G51430 | 3.1 | YLS2(yellow-leaf-specific gene2) | |
| AT1G70690 | 5.7 | kinase-related | Transcription factors | |||
| AT4G21380 | 4.9 | ARK3(Arabidopsis Receptor Kinase3) | AT3G23250 | 15.6 | AtMYB15/AtY19 | |
| AT5G06740 | 4.7 | lectin protein kinase family | AT3G50260 | 4.7 | ERF/AP2 | |
| AT4G23150 | 4.3 | similsr to protein kinase family protein | AT1G48000 | 3.3 | MYB112 | |
| AT3G54950 | 3.8 | PLAIIIA/PLP7 (PATATIN-LIKE PROTEIN 7) | AT1G22190 | 3.2 | AP2 domain-containing transcription factor, putative | |
| AT1G66880 | 3.8 | serine/threonine protein kinase family | AT5G65210 | 3 | TGA1 | |
| AT4G28490 | 3.3 | HAESA(RECEPTOR-LIKE PROTEIN KINASE 5) | AT1G32640 | 2.8 | JAI1(MYC2) | |
| AT3G47090 | 3.2 | leucine-rich repeat transmembrane protein kinase, putative | Abiotic stress | |||
| AT2G39660 | 3 | BIK1 (botrytis induce kinase 1) | AT4G36990 | 7.2 | HSF4 (HEAT SHOCK FACTOR 4) | |
| AT2G25470 | 2.7 | leucine-rich repeat family protein | AT2G21620 | 3.6 | RD2 (RESPONSIVE TO DESSICATION 2) | |
| AT3G20590 | 2.5 | NDR1(NON RACE-SPECIFIC DISEASERESISTANCE1) | ||||
Shown genes related to detoxification, secondary metabolism, and stress responses that were upregulated greater than twofold 72 h after Botrytis cinerea infection. Microarray data are derived from two biologically independent experiments; details are given in Supplemental Table 1and 2 online.