Table 1.

Genes encoded in a 47-kbp genomic region unique to Trichoderma hamatum GD12.

Gene	Start–end (orientation)	Best hit in SwissProt (amino acid sequence identity)	Best hit in NCBI Proteins	Pfam domains
1	6,264–7,541 (+)	Q9PKX8.1 Chlamydia muridarum tyrosine-tRNA ligase (28%)	EGU81361.1 Fusarium oxysporum hypothetical protein (39%)	None
2	8,951–13,442 (+)	P11636.2 Neurospora crassa Quinate permease (32%)	EHK41798.1 Trichoderma atroviride hypothetical protein (60%)	Sugar (and other) transporter (PF00083)
3	17,805–21,557 (+)	Q4WYG2.2 Aspergillus fumigatus nonribosomal peptide synthetase 5 (31%)	XP_001262961.1 Neosartorya fischeri nonribosomal peptide synthase (54%)	AMP-binding enzyme (PF00501); Phosphopantetheine attachment site (PF00550)
4	21,747–23,653 (−)	Q864R9.1 Macaca fascicularis multidrug resistance-associated protein 1 (32%)	EHK16312.1 Trichoderma virens hypothetical protein (82%)	ABC transporter (PF00664); ABC transporter transmembrane region (PF00005)
5	26,142–30,603 (+)	Q6ZPS2.2 Mus musculus carnosine synthase 1 (26%)	XP_001262963.1 Neosartorya fischeri hypothetical protein (56%)	ATP-grasp domain (PF13535)
6	32,148–35,686 (−)	Q635G4.1 Bacillus cereus L-alanine–pimeloyl-CoA ligase (35%)	XP_003298955.1 Pyrenophora teres f. teres hypothetical protein (64%)	Aminotransferase class I and II (PF00155)
7	36,727–45,336 (+)	Q4WAZ9.2 Aspergillus fumigatus nonribosomal peptide synthetase 14 (38%)	ELA23575.1 Colletotrichum gloeosporioides polyketide synthase (49%)	Beta-ketoacyl synthase, N-terminal domain (PF00109);
				Beta-ketoacyl synthase, C-terminal domain (PF02801);
				Acyl transferase domain (PF00698);
				Alcohol dehydrogenase GroES-like domain (PF08240);
				Zinc-binding dehydrogenase (PF00107);
				KR domain (PF08659);
				Phosphopantetheine attachment site (PF00550)

This region (GenBank: KB232787) has no detectable nucleotide sequence similarity to previously sequenced Trichoderma genomes.